RNA id: TCONS_00019121


Basic Information

Item Value
RNA id TCONS_00019121
length 1003
lncRNA type antisense_over
GC content 0.38
exon number 3
gene id XLOC_009023
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8350029 ~ 8394601 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTGGATGATTCAGTCGACTTTGTGTCCAAAAGATGGCGCCAAAACATAACAAAGGTCCCCACCACACCAAACCTCAATTCTGACATGGTGGCCTATAAGCATTATTACCAAGATTTGAGGAGCCCCATACTGATCTCGCCTGCTCTACAGCGCCTTTCTGAGGCAGAAGGAGATTGTCAGCTCTCATATTAAAAGAGTATTCGGCGGATTAAAAGGTGACGTGAGAACAGCAACTGCAGCCCGACTGATCTGACCCACTGAACAGAAGAGTAATGCGGAAGGAGAGAAGAGCCTCTAACGAAACATGCTGACACCATCCTGAGATTCGCAAAAGGTCATCCAGATCACATTTCTAACAGGAACAGCAATGGACAGGCTGTGATTACAACAGGAATGTCCATGTGGTCCTGGAATGCTGTCTGGCTTTATATACATTCCAATATTCAATACCACAATATACTAGTGATGACCATGATATTACTGTGAGCACTTCAAAACTCCTATcaataattatgtattattttagcGCTCTTTAAGAATACTTAAATTGGCGTATTGCAGCGGTTTTCATCACAACACCATACACTTAAATATATATTACgagtgtaacgatacactcagctcacgatacgatgtgtatcacgatatttggaataaaaattttaaatttaactgaaatgcaaattttaccaagtaaactattttttatgtatttcttttgtttcaacttgttaaactgatccttctttaagaaaataaattaaacaggcctgtctctgaaaaaaaaaaaaacaatttaaaacttcttaaaaaatattattgaaattacaGAGTGAAATGAattatctctaaatatatttatggatagtcagaacaaaggtttaaatgctaaaacggcttgccatacgcgcgcgtctatcatccgccctctgtagtaacagctcacggtcagctcatgtcatgtgtgattttgcggccgccaatacatcattatatgaaga

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko03070 Bacterial secretion system
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019120 lncRNA downstream 1284716 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1315307 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1373108 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00019119 lncRNA downstream 2448047 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00019122 lncRNA upstream 204990 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 794552 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 2052056 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 2361609 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 2579116 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00017790 mRNA downstream 30041 8314932 ~ 8319988 (-) True XLOC_009022
TCONS_00017788 mRNA downstream 40812 8235531 ~ 8309217 (-) False XLOC_009021
TCONS_00017789 mRNA downstream 40822 8277999 ~ 8309207 (-) True XLOC_009021
TCONS_00017784 mRNA downstream 158037 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017787 mRNA downstream 158037 8189108 ~ 8191992 (-) True XLOC_009020
TCONS_00017791 mRNA upstream 30110 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA upstream 31073 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017793 mRNA upstream 209876 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017794 mRNA upstream 209928 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017795 mRNA upstream 419154 8813755 ~ 8856391 (-) False XLOC_009027
TCONS_00017778 other downstream 1341091 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1383784 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1383790 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1403938 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 444901 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 593042 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 1207036 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1791453 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3581542 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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