RNA id: TCONS_00017830


Basic Information

Item Value
RNA id TCONS_00017830
length 118
RNA type rRNA
GC content 0.51
exon number 1
gene id XLOC_009050
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 11976143 ~ 11976260 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGGCACAGCAAAATCACCCTGCAGCGCAAGACCGGTTACTGACTAAAGCTAAACGGGGCTGAGCCTAGTCAGTACctgtatgggagaccacatgggaaaaactaggttgctgttggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000120531

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019125 lncRNA downstream 100187 11870184 ~ 11875956 (-) True XLOC_009048
TCONS_00019124 lncRNA downstream 150262 11818484 ~ 11825881 (-) True XLOC_009047
TCONS_00018815 lncRNA downstream 553039 11414691 ~ 11423104 (-) True XLOC_009045
TCONS_00017823 lncRNA downstream 876423 11097869 ~ 11099720 (-) True XLOC_009042
TCONS_00018814 lncRNA downstream 990037 10984265 ~ 10986106 (-) True XLOC_009041
TCONS_00019126 lncRNA upstream 12803 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017833 lncRNA upstream 12803 11989063 ~ 11992708 (-) False XLOC_009051
TCONS_00017831 lncRNA upstream 12803 11989063 ~ 11992903 (-) False XLOC_009051
TCONS_00017832 lncRNA upstream 13122 11989382 ~ 11991397 (-) True XLOC_009051
TCONS_00017841 lncRNA upstream 297687 12273947 ~ 12274863 (-) False XLOC_009055
TCONS_00017828 mRNA downstream 19162 11952956 ~ 11956981 (-) False XLOC_009049
TCONS_00017829 mRNA downstream 20658 11954351 ~ 11955485 (-) True XLOC_009049
TCONS_00017826 mRNA downstream 292614 11679759 ~ 11683529 (-) False XLOC_009046
TCONS_00017827 mRNA downstream 294490 11679849 ~ 11681653 (-) True XLOC_009046
TCONS_00017825 mRNA downstream 634508 11308462 ~ 11341635 (-) True XLOC_009044
TCONS_00017834 mRNA upstream 28517 12004777 ~ 12011239 (-) False XLOC_009052
TCONS_00017835 mRNA upstream 28884 12005144 ~ 12011390 (-) False XLOC_009052
TCONS_00017836 mRNA upstream 33151 12009411 ~ 12011202 (-) True XLOC_009052
TCONS_00017837 mRNA upstream 94777 12071037 ~ 12113045 (-) False XLOC_009053
TCONS_00017838 mRNA upstream 113092 12089352 ~ 12229874 (-) True XLOC_009053
TCONS_00017819 other downstream 1789974 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017810 other downstream 2356190 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017798 other downstream 2988384 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017797 other downstream 3119764 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017778 other downstream 4967205 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017854 other upstream 1848212 13824472 ~ 13824604 (-) True XLOC_009061
TCONS_00017858 other upstream 2100279 14076539 ~ 14083113 (-) False XLOC_009064
TCONS_00017866 other upstream 2209128 14185388 ~ 14193896 (-) False XLOC_009066
TCONS_00017874 other upstream 2339094 14315354 ~ 14315470 (-) True XLOC_009071
TCONS_00017882 other upstream 2659409 14635669 ~ 14635785 (-) True XLOC_009076