RNA id: TCONS_00017790


Basic Information

Item Value
RNA id TCONS_00017790
length 1815
RNA type mRNA
GC content 0.41
exon number 2
gene id XLOC_009022
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8314932 ~ 8319988 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTGGTGAGTTGTGTTGTGATTAAAGCTAGCGTTCGCTTGTCGGTTTCATTTTTTAGTCCTTCTTGTAAAATGCCTTCGATAGGCTCCGGGACGACGTGTGCAGTTCGTGGTTGTCACTACAACCGGAAAAAACTAAACGTGTGGTTAAAGCAGGAGTGTTATGATCACAAACCGCTCACGAAGTCGGACTGCTCCTGTCCGCAATGGTATTATTTCTATCGGCTTCCCACTGACGAGGAGGACCGGAGGATTTGGCTCAGAAACCTGTACCTGAAAAGGCCACCAAAGGCCCTGTACGTCTGCTCGTTTCACTTTGTTGACAAGAAGCCGACAGAGAAAAATCCCTATCCGACACTGTGGCTCGGTCACCGCATTCCCCCGGAGAAGAAGCGCCGTGTTATAAAGAAAGAAACCACCGACGTTGGGATTAAAGatgaGCCTGAAGACATAGCTATTGACACTTTCACACTGACTGATGCTGAAACCCCAGATGGAGCAATACCACAAAACAGTGCGCTTTGATGAAGTTCAGCATCAATGAAGTAGAGTTTGTTTTTAAACTGTGTCAGTGTCTGTTTCAGTGCCTCTTGAGGAGCTCCTTCATTTTCAGATTCTTTAAGGACGCTCAAGAAACAAACCACAGCTTGGTGTGTGGATTGATGTAATGGTTGAATGCGAAAGCATCACTATGACCAAACCACTGGCATTTCAGTACAGAGCACATAGTCTGTTCAGAGAGGGCTCTTTAACCATATTCTGGAttacagaagtataaatgtgATGTGCAGAAAGGAGAATACTAAAGACTAACTCTCTCTGGCATATTATTATATTGCCAGTAACTGGTTCAGTTCCCAGTTTGCTTTTCAGAACTCCCCGAGTTATTTCTGACGTTGATTCTACAATATGCTGGAAACATtgttcagagattttgctccatattggaaTGACTGAAtcatacagttgctgcagatttgacgtgtgaatctcctgttcctgGCACGTCCTAAAAAAGCTCTACTGGATTCTGATGAACTTGAAGGACTGTGCGCTTTttctgctgtagctcatctgctttaaGGTATTATGATGTGCTGTGTTCGCATCAatcttctgcagacctctgttgAAAAAGTGATTATTGTTGTGTGTGAAGATCACAGctgatcagtagtttctgaaatactcagaacagcccaTCTGACAACTTCAACCTCAAAGTGAACAGTCTATTTTCCATGTGAAGCCATTAAGATTCATTTCCGAATAAAGcttccaatgagtcaaagagaacaaaatcattgcTTCTTGAtgaactggtgccaaatatcaaaaagaaaaaaatgcaatttgCCGTAGTTCttatgtaataatttatttgCGCCTTTGAAGAATCTCAGTGAACGCACTGTGGCTTTTTGAGGTGTGAGATTTTTGGGGAGGCAGATACTCAAGACACTTCTGGATGTAATAATACTGAAACGTATTGATGATAGACTTTTGCTGAGGGGATTATAGAATGACAGAAAACATAATTTCATTTATTGTGCAATGTGGTAGGCTGGTTTGACCCTTCACACCTGTTTTTGTTATTACATGATCTAAAAATGTATGCGCATGTTGGCCTTTTTCTGCAAGTTTTCAGAATGTGCATAAAATTTGGTGGGTGGAAAGAAAACTACGTGAATCATTTGGTACTCTctgtttgaacttcagcagattgtCTCGACAATGTCTAAATGTCACCAAGTGATTGGttgattatttatttgcattaatgaACAGGTGTACTCAATAAAGAAACCAACAAGTGAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4983 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000137552

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019120 lncRNA downstream 1249619 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1280210 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1338011 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00017758 lncRNA downstream 2413454 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00019121 lncRNA upstream 30041 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 279603 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 869165 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 2126669 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 2436222 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017788 mRNA downstream 5715 8235531 ~ 8309217 (-) False XLOC_009021
TCONS_00017789 mRNA downstream 5725 8277999 ~ 8309207 (-) True XLOC_009021
TCONS_00017784 mRNA downstream 122940 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017787 mRNA downstream 122940 8189108 ~ 8191992 (-) True XLOC_009020
TCONS_00017786 mRNA downstream 123091 8186823 ~ 8191841 (-) False XLOC_009020
TCONS_00017791 mRNA upstream 104723 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA upstream 105686 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017793 mRNA upstream 284489 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017794 mRNA upstream 284541 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017795 mRNA upstream 493767 8813755 ~ 8856391 (-) False XLOC_009027
TCONS_00017778 other downstream 1305994 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1348687 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1348693 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1368841 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017797 other upstream 519514 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 667655 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 1281649 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1866066 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3656155 11976143 ~ 11976260 (-) True XLOC_009050

Expression Profile

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