RNA id: TCONS_00017795


Basic Information

Item Value
RNA id TCONS_00017795
length 2970
RNA type mRNA
GC content 0.38
exon number 8
gene id XLOC_009027
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8813755 ~ 8856785 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTCTGTGCTGTGTAAAACAGGAAACGTCGAAAGGCGTTAGCAGCAGTTAATTATTAGCCTGTTGGCTACCACAgctacacacagaaacaaaccACAGCAAAGCCTTCATCTGAAGAAGCCAATAAAGACTATCGCCTGCCCGGTCGATTGGTTTCATCGGTGGGACCGACATGTCAGAGACGTACgATTTCCTGTTCAAGTTCCTGGTGATTGGCAGCGCCGGGACTGGGAAATCATGCCTCCTTCACCAGTTCATAGAGAACAAGTTCAAACAGGACTCCAATCACACCATCGGCGTTGAGTTCGGCTCCAGGGTTGTCAATGTTGGTGGCAAAACAGTCAAACTGCAGATCTGGGACACGGCTGGACAGGAGCGCTTTAGgtcaGTGACCCGCAGTTACTATCGTGGAGCAGCAGGAGCTCTTCTCGTGTATGACATCACAAGTCGGGAGACCTACAATGCTCTGACTAACTGGTTGACAGACGCAAGGACACTGGCCAGTCCCAACATCGTCATCATCCTGTGCGGAAATAAGAAGGATCTGGACGCAGACCGTGAAGTCACTTTCCTAGAGGCATCTCGCTTCGCCCAGGAAAATGAGCTGATGTTTTTAGAGACGAGTGCTTTGACTGGGGAGAATGTCGAGGAAGCCTTTCTTAAATGCGCTCGCAGCATCCTCAACAAGATTGAATCAGGTGAGCTGGACCCAGAGCGGATGGGTTCTGGGATTCAGTATGGCGACGCGTCCCTGCGGCAGATCCGACAGCCCCGGGGCTCTGCTGCACAGACCAAGCAGCAGTGTAACTGTTAGGGCTCTGAAGACCCTTAAACCACACCGGATGTCAGACCAGACACACACAACCTCCCCCTCTCAGCTCCGGGTGTCTCTGGGTTTGCACGACCTCCATCCCATCCCAAAATGTGACCCTTCCACACCCAGACACATCTGGATCATTTCTTACGAAGTCCATACTCAAgttttgacctctgacctcagAAAGCTTTTCACCAAGGACAGATCTCCTGACAGAACTGCATTGCTGGGAGAGCACAGGTGAATCTCCACCAGAAACCGAGATTGTGTGTCGCGTGTGTACGAGTGCGTTTTTAACTTCTCCTGTGATCTGTACACACGCAGTCATCAGCCATCATCTAGactaaaccaatcaatcaaagcGGTAGATCAAATATTTATAATCCTAAACTAGATTTCACTGAACCGTTTTATACATCGAGACATATCAGATCTTAGAGggataaaaatgaaaagtaactcatttattcatcctcaaatggttctaaaagctttgagatttttttttgtttgttttgtttttttttttttatgttgaacgCCAAGGaagatatttaaaagaattttggaAACTGTTTAGTCATTGATAAaacatattatggaagtcaatggttaccggttttgcGTTTaatcgacaaaaaaaaaatctctaacagttttaaaaaagtgaaaGGTAGTAAGTTTTGactgatttttcatttttttttttattcaccctCAAATAATTCCAAAGTTGTATGACagtcatttatttttgttcaacACAAAGATATTTGACAGAGTTTTGGAAAATATGTTTCACAAAATCAATCTGTAACAAGTTTCAAACAAGTGAAAGGTTTGTAAATGATGACGGAGTTTTCTTTTTTAGTCACACACAAATAGTTCCAGAGCTGTATGagatttgtttatttctgttaaacacaaacaaagatattttaaagagttttaaaaGCTACGTTTAGTCATTGACctaatattgaaaaaagaaaaatactatggaagtcaatggttaactgtttccagcatttttcaaaatatcttatttttgcgTTTAGCCGACAAAATTATCTCTAACaagttttaaacaagtgaaaagTTATTAAATTGTAGCGGAGTTTTCACATTTAGTCACTCTCAAATGGTTCCAAAGTTGAATGAGAttaatttatttctgttgaacGCCAACAAAGATATTTGAAAGAGTTTTGGAAACTATATTTAAACATTGATATAGCATTGAAAAAAATATGATGGAAGTCATTGCTTTCTAGCATTTCTACATCTTCTACATCAcatcttcttttgcgtttaaacaaaaaaagaatctTTAACGGGTTTCAAACAATCAAAAGGTTAATAAATGATGacggaatttttatttttagtcacTTACCAATGATTCCAAAGttgttttgtgatttgtttatttctgttaaacacaaacaaagattTTTGAAAAAGTTTTGGATACTGTTTATTCATTGATATACtattgaaaaatttaaaaatatggaaGTCAGGGGTTaccggtttacaacatttttcaaaatatcttctttttgctTTTAATCAAAAGTTTCAAACAAGTGAAAgattaataaatgatgacagaattttcatttttggatgaattatccctttaaattgaATGTCCATTTTGACATCCTTAAAAATGACAATTGCCGATATGATTGGTCCATGCAGGCTagtttgtgtctttttttaagCATTTCAAGCCAAATACTCAGTTTCAGTAGGAAAGTGAAGCTCTTTAAACTCCTTGTGTGTTCAGATTTTTATCATGCTACATTGGCCATGCATTTAAAAGCGCTTTTAGGAGCACAGGAGGTGAGAGGAGCAAGAAACATCTGTTCAGATCTTGTCAGTTGCTGTTATCTGGATGATATTAGATGTTAAGCGCACAGCCCAATCTCGAGGTTATCAGCTAACTTTTAACCTCTTGCATTCATTTTACAAACCCTCACGCGCTATTGCTGTATAATTTATCGAGACGTAGAACTAAAAATCAATGTAAGTTCTGgttttgatttacatttttgcaCTTATTTGGTAGGAGACCACTTGAAAAGTAAAtcctatttttgtttattctgtgACATTTCTTACaaattaaaaaattcaaataataa

Function

GO:

id name namespace
GO:0030100 regulation of endocytosis biological_process
GO:0006886 intracellular protein transport biological_process
GO:0015031 protein transport biological_process
GO:0032482 Rab protein signal transduction biological_process
GO:0005768 endosome cellular_component
GO:0032593 insulin-responsive compartment cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-040822-15 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in regulation of endocytosis. Predicted to act upstream of or within Rab protein signal transduction and protein transport. Predicted to be located in plasma membrane. Predicted to be active in endosome and insulin-responsive compartment. Orthologous to human RAB4B (RAB4B, member RAS oncogene family).

Ensembl:

ensembl_id ENSDART00000008273

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019122 lncRNA downstream 211661 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019121 lncRNA downstream 419154 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019120 lncRNA downstream 1748442 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00017779 lncRNA downstream 1779033 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00017775 lncRNA downstream 1836834 6968381 ~ 6976921 (-) False XLOC_009014
TCONS_00019123 lncRNA upstream 332762 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00018812 lncRNA upstream 1590266 10446657 ~ 10448625 (-) False XLOC_009038
TCONS_00017821 lncRNA upstream 1899819 10756210 ~ 10759101 (-) True XLOC_009040
TCONS_00017822 lncRNA upstream 2117326 10973717 ~ 10985904 (-) False XLOC_009041
TCONS_00018813 lncRNA upstream 2127874 10984265 ~ 10985904 (-) False XLOC_009041
TCONS_00017794 mRNA downstream 50649 8604529 ~ 8763106 (-) True XLOC_009026
TCONS_00017793 mRNA downstream 148093 8604477 ~ 8665662 (-) False XLOC_009026
TCONS_00017791 mRNA downstream 296200 8424711 ~ 8517555 (-) False XLOC_009024
TCONS_00017792 mRNA downstream 296379 8425674 ~ 8517376 (-) True XLOC_009024
TCONS_00017790 mRNA downstream 493767 8314932 ~ 8319988 (-) True XLOC_009022
TCONS_00017799 mRNA upstream 134186 8990577 ~ 9002155 (-) True XLOC_009029
TCONS_00017800 mRNA upstream 154500 9010891 ~ 9031996 (-) True XLOC_009030
TCONS_00017801 mRNA upstream 377661 9234052 ~ 9272328 (-) False XLOC_009032
TCONS_00017802 mRNA upstream 379218 9235609 ~ 9257136 (-) True XLOC_009032
TCONS_00017803 mRNA upstream 422601 9278992 ~ 9294929 (-) True XLOC_009033
TCONS_00017778 other downstream 1804817 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017773 other downstream 1847510 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 1847516 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 1867664 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017798 other upstream 131252 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 745246 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 1329663 10186054 ~ 10186169 (-) True XLOC_009039
TCONS_00017830 other upstream 3119752 11976143 ~ 11976260 (-) True XLOC_009050
TCONS_00017854 other upstream 4968081 13824472 ~ 13824604 (-) True XLOC_009061

Expression Profile

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