RNA id: TCONS_00017776


Basic Information

Item Value
RNA id TCONS_00017776
length 2157
RNA type mRNA
GC content 0.43
exon number 4
gene id XLOC_009014
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6968381 ~ 6976921 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gaAAACCTACAGGCCACCAGTCGTGCTACAGCTACAGACCAGTGGTTTAGCAGCAACAGCTTTCGAGCGACGGAAACATGCCGAAGCGTTGTGCTTATgtattgtgcaaatctgacaccagGTATCCTAAAAGATTGGAGGGCGAGGTGAAATTTTTTCCCTTCCCAAAACCTAAAACTCAAGGGGAGAAATGCCGGGCTTGGATCAGGCAGTGTGGGAGGCCGCATTCACAACTAAACGTCGACAGGATTAACAAAAACACCTACATATGCTCCAAGcaTTTTGTTAACGGGCGACCTACCCCCGAGTACCCCAATCCGATCGCAGCTCACCCGGAGTTAGATCTAAGAAGGGAACATCAAGGGGCTTGCTGGACATCTCCAATAAAAGAGGAGCCAGAACCCCAAACTCAGCAGGAAGCCAGCACCTCAAACTCTACAGTGAACACATTTTACAGTACATCACAACAGAGTGGCTCCAGCTATGaAGAACATGATATGGGTGACCATAAAGAGGATCTAAAACCCCTGAAGGAAGAATTAGCCTATCAGGAGCAGGACATCTTAAATCTGAAGATTGAAATCAAGACAGAGGACGACTAACTCTATCATCTTCAAAAGGAACTTCCGAATCCACGCTCCTGAGATGCTTTAAAAGCAAACTCGTGTGTACTTCTCCACAGGGTTTTCATATGAGCAGTTTAACAGCTTGTGTCATTTTTTTGTGTCATTGTATCAACATTCCAGCTGATTCAAGTGCACAACAAACATTCCTCTCTCATACAAATGTATCAATTATGACATCGAAATTTGTCGATCTGTGTCAGCACACTGATCAACTCCTGGGTGgactatatttatatatgacaGTTTTTGGCCACACAGGGATGTTATTTCTGAGAACATGCCTGCTAAATTTAAGGAAGAATTTCCAAATACATTTGCCATCATAGACTGCACTGAACTGAAGATTCAGAGATCAAACTCATTAGTGTTGCAGAGTCAGACTCACTCCACCTACAAGTCTTCTATCACACTTAAGTCCCTAGTGGCCTGTGATCCACGAGGCGCAGTCATTTATGTTTCTGCCCTTTTCACTGGAGTAATTTCTGACGAAAAGATTTTCAATGAGTGCAACATCCTTCACATTTTGAAGGAGAACATTAAATGTGGAGTACATCTCAATGTAGGAGATGGCTTAATGGTTGATAAAGGCTTTCTAATTGAGAAGGAAGTTGAGGATTGGTTTGCAACTTAACATTCCACCTTTTGCAAGAGCAAACAGACAGATGCCACATGCAGATGCCACATGCAGATGCTACATGCAGATGCTGAAATGACCAAAAGAATAGCAAAGCGCAGGGTTCGTGTTGAAAGAGCTATTGCACAGATAAAGAAGTTAAAAATTGTGTCATGTCAATCCTGATTTTCCAGCTTGTGAATGTGAACATAAATCAGGagcagcatggtggtgcagtgggcagcacaatcgtcttaacagcaagaaggtcgctgggtctgaCCCCCACTGGGtccgttggcgtttctgtgtttgaatgttctccatgtgttgccGTAagttggtgctccggtttcccccacatacccaaaaatgtggtataggtgaattgggtaaactgaaattggctgtagtgtatgtttcccagtgattggttgaagctggaagtgcatccgtaaaacatatgctggataagttggtggttcattccactgtggtgaacccagattatcaaaagaactaagctgaaaagaaaatgaataaatgaatgaacataagtCAAATGTGGTATGTAGCCAGCATGCTGTCTAACTTCCAGCCACATATAATCAAAGATTAAGGTTGTCTGTGTGCAAAAGAGATGAGGGGTCAAGCAACATCATGCTATCGTCCTGCACTGCCTCGTTGGGTGAATTTTATATAACGTGCACAATACATGCACTTTAATACTGCCTCATCTAATTCTTTTACTTGATGGCTCAAACCACTTTCTAGTGGGTGTCTCTCGCCTCCTACAGTTATGTCAGCGGGGTCTGTTTACCAAGTAGCTGATGGGTGCTTCTGTCTGCCTTTTTAGTAAAGCAATTTTCTCTTCTGTAACTGAGAAAGTcctgaaaaataaaacactatCAATACAAA

Function

GO:

id name namespace
GO:0001704 formation of primary germ layer biological_process
GO:0048729 tissue morphogenesis biological_process
GO:0043011 myeloid dendritic cell differentiation biological_process
GO:0036342 post-anal tail morphogenesis biological_process
GO:0001773 myeloid dendritic cell activation biological_process
GO:0009888 tissue development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0007369 gastrulation biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0060026 convergent extension biological_process

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-030131-1610 Predicted to enable DNA binding activity and metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000169944

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00019119 lncRNA downstream 1066649 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017759 lncRNA downstream 1067146 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00017758 lncRNA downstream 1067153 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017760 lncRNA downstream 1067153 5899186 ~ 5901478 (-) True XLOC_009008
TCONS_00017753 lncRNA downstream 1170713 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017779 lncRNA upstream 55176 7032097 ~ 7034722 (-) True XLOC_009016
TCONS_00019120 lncRNA upstream 87547 7064468 ~ 7065313 (-) True XLOC_009017
TCONS_00019121 lncRNA upstream 1373108 8350029 ~ 8394601 (-) True XLOC_009023
TCONS_00019122 lncRNA upstream 1622670 8599591 ~ 8602094 (-) True XLOC_009025
TCONS_00019123 lncRNA upstream 2212232 9189153 ~ 9191277 (-) True XLOC_009031
TCONS_00017771 mRNA downstream 2386 6948644 ~ 6966245 (-) False XLOC_009013
TCONS_00017774 mRNA downstream 2410 6963632 ~ 6966221 (-) True XLOC_009013
TCONS_00017768 mRNA downstream 22345 6926987 ~ 6946286 (-) False XLOC_009012
TCONS_00017765 mRNA downstream 105314 6838039 ~ 6863317 (-) False XLOC_009011
TCONS_00017766 mRNA downstream 105314 6838264 ~ 6863317 (-) False XLOC_009011
TCONS_00017780 mRNA upstream 322835 7299756 ~ 7337537 (-) False XLOC_009018
TCONS_00017781 mRNA upstream 337686 7314607 ~ 7337148 (-) True XLOC_009018
TCONS_00017782 mRNA upstream 407599 7384520 ~ 7598294 (-) False XLOC_009019
TCONS_00017783 mRNA upstream 432392 7409313 ~ 7598542 (-) True XLOC_009019
TCONS_00017784 mRNA upstream 1193963 8170884 ~ 8191992 (-) False XLOC_009020
TCONS_00017773 other downstream 2386 6948893 ~ 6966245 (-) False XLOC_009013
TCONS_00017772 other downstream 2392 6948671 ~ 6966239 (-) False XLOC_009013
TCONS_00017769 other downstream 22540 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other downstream 27704 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017752 other downstream 1173216 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017778 other upstream 31901 7008822 ~ 7008938 (-) True XLOC_009015
TCONS_00017797 other upstream 1862581 8839502 ~ 8856379 (-) True XLOC_009027
TCONS_00017798 other upstream 2010722 8987643 ~ 8987759 (-) True XLOC_009028
TCONS_00017810 other upstream 2624716 9601637 ~ 9619953 (-) False XLOC_009037
TCONS_00017819 other upstream 3209133 10186054 ~ 10186169 (-) True XLOC_009039

Expression Profile

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