RNA id: TCONS_00017730


Basic Information

Item Value
RNA id TCONS_00017730
length 2887
RNA type mRNA
GC content 0.34
exon number 1
gene id XLOC_008993
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5242840 ~ 5245752 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATATTATGTAAAGACACAATGGTCATGCCAAGATGTATCACAGAAGGTATTTAACTCtggtaatgtgttttattttgagcAATGTTGAAATATAATGTTTAAGTTGTCTGTTGATGTAAAGTTCAATTTGTAAACATACTGTTTATTCGTGTTTTACACAATTACAATATGCTATATATTGTTCACTATTGCTGTTAACAAATGTAACcttgttgttatttttaacactataGTTAACTGCCTATCTATCTGCATTTTCTTCATCAGGTCACTGATGAAAACCTCGGTGCCTAAAGCAAAATGGAAAATAATACCAATTTTAACTTCATGTTGTTTGAAAATCTGGGGTACATAAGATATGCTCTCTTCATTTTGGGTTTTGTTCTGTACTTTTCTATAATATTCTTTAATGTCCTTATTATGCTTGCGGTGTTTCTGGAAAGGACATTACACCAGCCTATGTACATTCTGATTTCATGCTTGTCTATGAACTCTCTGTTTGGTACAGCTGGCTTTTTCCCAAGAGTTCTGTCAGACTTGCTGTCTGAAACACACTCAATCTCTCGTGAAGCATGCTTCTTCCAGTCTTTTGTCATTTTCACATATGCAGCAAATGAGTTCTCAATATTAATGATAATGGCGTTTGACAGATTTGCTGCAATTTGTAAACCTCTACATTACCACAGTATAGTTAGACCAAGGTTTCTTGCTTGTGTAATAGTTACAAACCTGACTTTTCCTATGATTTTGCTTGGTGTTGCTGGACTTTTAACTACCAAACTGAGAATGTGTGGTAACAAACTATTTAAGGTATACTGCCATAGCTATGAAATAGTCAAGCTTTCTTGTGACAACATCGCAATCAATAACGCTTTTGGcttgtttatattaataataactaccATCATTCCTTTAAGTTTAATATCATTTTCCTATGTAAAAATTATAATCATTTGTCAGAGAAGCTCAGCACAGTTTAAAGGCAAAGCTTTTCAAACCTGTATTCCACACATAGTGGTACTTTTGAATTTCACAATTGCTGTTATATGTGACACCACTTTGAGTCGGGTTGTGAATTTACAAATTCCTGTAGGTCTGTCAGTTTTTCTTTCACTTGAGTTTCTCATTATACCACCAATACTCAACCCCCTTATTTACGCCTTTAACCTGCCTGATATTCGCAAAAAAATGATCAGCCTTATAAAACCATTTCGGTAgtttttttcctgtttgtttatttcttgtcAGATGCAATACATGTTGCACATTCttattaaagttatgtttttcatattacattgtcattttactgtatttgatatgatttaatatttgcaaaagtaaacaaaacaacatttataaTACACTGATTACTTGAAAACCAATATCCTGCAAAGCCAAAAAAAGATGTATAAACAGTGTGGGTTTACTGTTACAACTTGCAGGTTTTTACATATAAGCAGTTTGATTTTTGTCTTAAAAATTACTTTACACTTTACTTTGGCTCCTTACCTGCCTTTAATTAAGATCttgactgtttattagtactaATATAGTACTTAGTTATTCTACATTCCTTATTCTATCCAATACATAAAGCAAAGTACTATCTTctctattaataagcagcaaatgagTACTTTGTTGAGCTTAAAAAGGCTTAGTTGATGGCttgttcattttgaaaaatgtgacaattacattatattattattttatttacttattttatcttACAGAACACTGGCCTCtgatttataaaaatatagattGAAATTTGCATCTCTTTAGGGATTACTTCACCCATTATCAATATCATTAGCAATGTCATCCTTCTGAGTTACAACTCCCATCAAGCATTGTACCTATCAAACATCTACAGTTGTTAACTTGTTAGCAATTTTGACTCTCATACACACAGCCAcaagtcatcatcatcatcatcagtagcacaatcgcctcacagaaagaagatcactcagtcccggctgggttagttggcattttaaAATTTGCATGTGTTCCCTGTGTTTGCCTGGGTTTCTTCCAtgtgctccgttttccccaacagtccaaggacttgctatagttgaattgaataagctaaattggccatagtgtatgtgtgtgaatgcaagagtgtacgagtgtttcccagtgatgggttgtggctaaaagggTGTCCgctgctgcataagttggcagttcattttgctgtggtgacccctaattaataaagggactaagctgtatagaaaatgaatgaatgaatgtgcaagaataatgcattttatttagcgattcattacgctgtggtgacacctgattactaaagaaactaagccaaatagaaaatgaatgaatgaataaaaataatgcattttatttaaaggcccCCGTACAAGTCAGCAAAAACAGtcagttcaaataaaaacacattataaaagtcaatagaaaacaatgcagtttttaaaaagtgcagTTGAGTTAAAGAGAGACGGCTGTTCTAAACAGATTAGTTTTGAGTTtagatttaaattgtaaaaaaataattaagaccACGGAGATCAGGAGAAGGTGAATTCCAAAGCTTCAGGACCAGAGTCTGCTCCACATGGTGACAAGGTGGACGGGAAACAACAAGGTATGGAGGAGCAAGATTGTGGTTGGCTTTAAAAGTAAGACGTATTTTATAATTAGTTCTGAAAGAATCATCACTGATTACAGacatcattaaattatttttttttttcatggataACCTTCTgagccgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgcggtacaggtgaattgggtaggctaaattgtccatagtgtgtgaatgtgtgtgtggctggaagggca

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070806-106 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in olfactory rosette.

Ensembl:

ensembl_id ENSDART00000174079

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018811 lncRNA downstream 25134 5215808 ~ 5217706 (-) True XLOC_008989
TCONS_00018810 lncRNA downstream 39673 5202251 ~ 5203167 (-) True XLOC_008986
TCONS_00017703 lncRNA downstream 756973 4445060 ~ 4485867 (-) True XLOC_008974
TCONS_00017701 lncRNA downstream 797242 4429018 ~ 4445598 (-) False XLOC_008974
TCONS_00017697 lncRNA downstream 806409 4422481 ~ 4436431 (-) False XLOC_008974
TCONS_00017751 lncRNA upstream 541460 5787186 ~ 5791331 (-) False XLOC_009005
TCONS_00017753 lncRNA upstream 549237 5794963 ~ 5797918 (-) True XLOC_009005
TCONS_00017759 lncRNA upstream 652684 5898410 ~ 5901485 (-) False XLOC_009008
TCONS_00019119 lncRNA upstream 652684 5898410 ~ 5901982 (-) False XLOC_009008
TCONS_00017758 lncRNA upstream 653178 5898904 ~ 5901478 (-) False XLOC_009008
TCONS_00017728 mRNA downstream 3304 5237596 ~ 5239536 (-) False XLOC_008992
TCONS_00017729 mRNA downstream 3656 5238267 ~ 5239184 (-) True XLOC_008992
TCONS_00017727 mRNA downstream 12417 5228580 ~ 5230423 (-) True XLOC_008991
TCONS_00017725 mRNA downstream 19916 5220992 ~ 5222924 (-) False XLOC_008990
TCONS_00017726 mRNA downstream 20243 5221680 ~ 5222597 (-) True XLOC_008990
TCONS_00017732 mRNA upstream 5228 5250954 ~ 5252673 (-) True XLOC_008994
TCONS_00017733 mRNA upstream 15923 5261649 ~ 5262942 (-) True XLOC_008995
TCONS_00017734 mRNA upstream 61402 5307128 ~ 5309213 (-) True XLOC_008996
TCONS_00017736 mRNA upstream 145008 5390734 ~ 5467477 (-) True XLOC_008998
TCONS_00017737 mRNA upstream 249277 5495003 ~ 5524271 (-) True XLOC_008999
TCONS_00017702 other downstream 760610 4435465 ~ 4482230 (-) False XLOC_008974
TCONS_00017700 other downstream 760693 4426494 ~ 4482147 (-) False XLOC_008974
TCONS_00017694 other downstream 877568 4365158 ~ 4365272 (-) True XLOC_008973
TCONS_00017689 other downstream 1138314 4104408 ~ 4104526 (-) True XLOC_008968
TCONS_00017655 other downstream 2506342 2736383 ~ 2736498 (-) True XLOC_008940
TCONS_00017735 other upstream 137336 5383062 ~ 5383180 (-) True XLOC_008997
TCONS_00017752 other upstream 543612 5789338 ~ 5795415 (-) False XLOC_009005
TCONS_00017769 other upstream 1681292 6927018 ~ 6946091 (-) False XLOC_009012
TCONS_00017770 other upstream 1693162 6938888 ~ 6940927 (-) True XLOC_009012
TCONS_00017772 other upstream 1702945 6948671 ~ 6966239 (-) False XLOC_009013

Expression Profile

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