RNA id: TCONS_00017972


Basic Information

Item Value
RNA id TCONS_00017972
length 693
RNA type processed_transcript
GC content 0.55
exon number 5
gene id XLOC_009128
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 17948397 ~ 18091157 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gGAGAGTGACTCAATGAGGAAACATCTGAGAGAACCACAGGACTCCAACTAGCTTGCGACTTTTAGCACGTCACAATGAGGGAACGGCAGCGGCTGGAGACAATCTTGAACCTCTGCGCTGAGTATAACAAGGGCGACGGGCCGCCGGGTGATTTGGGCAGGATGGGCGTCTCTGGGCTTGGCTCGAGGGACGGGCTTAACGTCAGGCGTCCTTCAATGGACAGCGTGAACAGCGCTTCACTAAGAGCGACTCAAAGACAACGGGAAAGCCAAGAGGACAACCTGAAGGAGGATAGCAGTAGCACTGAGAGTGCGCAGCTGGACGGACGGACACCTGCTCTGCTAAATGGACAGAATGGACAGGCTGAGGAGTCTCTGGGTTCGGGCAGCATTGGCCGTCTGGAGCTGGGCTACCTGGAGGAGGAGCGGGTTCGAGTGCTGGCAAAGGTAGATGAGCTCAAAGCTCGAATCACAGAACTGGAGCAGCAACTTCAGGAGTCTAAACAAGAGGCGGAGATGGAGAGAGCTCTGCTGCAGGGAGAAAGACAGGCTGAGATGGAGCAAATCGAGACTGAGACCGAGATTATCAACCAGCTGCAGCGCAAACTCACTGAACTGGAGAGCAGCATCCAGAGAGAGAAGGACAAGgaAGCTGAGACTCTTGAAGCAGCGACAAAGCAGTTTGAAGACCTG

Function

GO:

id name namespace
GO:0070507 regulation of microtubule cytoskeleton organization biological_process
GO:0045180 basal cortex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121114-8 Predicted to be involved in regulation of microtubule cytoskeleton organization. Predicted to be active in basal cortex. Orthologous to human PHLDB1 (pleckstrin homology like domain family B member 1).

Ensembl:

ensembl_id ENSDART00000154524

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00017965 lncRNA downstream 118002 17844191 ~ 17865563 (-) False XLOC_009127
TCONS_00019141 lncRNA downstream 228639 17751150 ~ 17754926 (-) True XLOC_009125
TCONS_00017963 lncRNA downstream 228698 17751150 ~ 17754867 (-) False XLOC_009125
TCONS_00017955 lncRNA downstream 600983 17379665 ~ 17382582 (-) False XLOC_009122
TCONS_00017956 lncRNA downstream 600999 17379788 ~ 17382566 (-) False XLOC_009122
TCONS_00017982 lncRNA upstream 164566 18166781 ~ 18169348 (-) True XLOC_009134
TCONS_00019142 lncRNA upstream 1282949 19285164 ~ 19286600 (-) True XLOC_009147
TCONS_00018008 lncRNA upstream 1579692 19581907 ~ 19583015 (-) True XLOC_009152
TCONS_00019143 lncRNA upstream 1782276 19784491 ~ 19793611 (-) True XLOC_009157
TCONS_00018021 lncRNA upstream 1927280 19929495 ~ 19932848 (-) True XLOC_009158
TCONS_00017970 mRNA downstream 23337 17949047 ~ 17960228 (-) False XLOC_009128
TCONS_00017967 mRNA downstream 113475 17866060 ~ 17870090 (-) False XLOC_009127
TCONS_00017966 mRNA downstream 114450 17862207 ~ 17869115 (-) False XLOC_009127
TCONS_00017968 mRNA downstream 114695 17868292 ~ 17868870 (-) True XLOC_009127
TCONS_00017964 mRNA downstream 169885 17788715 ~ 17813680 (-) True XLOC_009126
TCONS_00017974 mRNA upstream 100065 18102280 ~ 18115624 (-) False XLOC_009129
TCONS_00017975 mRNA upstream 100970 18103185 ~ 18115540 (-) True XLOC_009129
TCONS_00017976 mRNA upstream 117403 18119618 ~ 18124678 (-) True XLOC_009130
TCONS_00017977 mRNA upstream 135526 18137741 ~ 18138607 (-) True XLOC_009131
TCONS_00017979 mRNA upstream 155450 18157665 ~ 18162647 (-) True XLOC_009133
TCONS_00017944 other downstream 912319 17061577 ~ 17071246 (-) False XLOC_009112
TCONS_00017936 other downstream 1110965 16794111 ~ 16872600 (-) True XLOC_009108
TCONS_00017917 other downstream 2023097 15959376 ~ 15960468 (-) True XLOC_009094
TCONS_00017896 other downstream 2599582 15383898 ~ 15383983 (-) True XLOC_009086
TCONS_00017891 other downstream 2758863 15221483 ~ 15224702 (-) False XLOC_009082
TCONS_00017973 other upstream 18330 18020545 ~ 18023109 (-) True XLOC_009128
TCONS_00017978 other upstream 149450 18151665 ~ 18151780 (-) True XLOC_009132
TCONS_00017983 other upstream 175726 18177941 ~ 18180824 (-) True XLOC_009135
TCONS_00018000 other upstream 1092296 19094511 ~ 19095107 (-) True XLOC_009145
TCONS_00018003 other upstream 1133764 19135979 ~ 19138513 (-) True XLOC_009146

Expression Profile

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