RNA id: TCONS_00019143


Basic Information

Item Value
RNA id TCONS_00019143
length 1016
lncRNA type antisense_over
GC content 0.45
exon number 3
gene id XLOC_009157
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 19784491 ~ 19793611 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGATAATCTACATTCATCTTGTGCTCTGCACTTCAAGACATAAAGGATCACAGACCCTGAAAAGAACAGTATCAAACTGAGACTTGGGTATCCCGGTCAGGGAATGGAGGTCATCTGGAGCTGGGGTTCCAGAGCCCGGTCAGATTAGACGGGCTGGGCTTCCTGAGCAGCCTGAGGGAGAGGATGAAGAGGCCCAGGCTCATCACACCCAGCACAACCACACCCGAAATCAGTGCACTGGTGACCGCATTCAGAGGCTGGGACGAGCTGCTCACTGCAGGGCCACAGACAGGGGCCTCCAGTGAGCTCAGGCTAATGCTGAAGAGCACCGCTGTGGGAAAGGTGTTGTTGTTTATGAAGCCTCTGCACTGCGGTTCTCCATGACGGCTGTTCAGTGCCAGGTCAACATCAGTGTATCCAGAGTACAACACAGGACAGAGGTTGATCTTCAGTGTTATCGTCTGAACACCACAGTAGATGCTGATGTCTCTCTCACCTTGAGGGAAACACAATATCACGAGTGCATGAAAAGGCATCACTTCATAAAACTAGCCTTTTTATATTCATTAGTGTGATGTTTTAAGAGcaaaattaaacagaaatgttACTGTAAGTTAAAAAATGTCTAACTTTCAAATGACAGCAGCACTCAAGTTCCAAAAGATTCAAGTTATTTTTGAGatgctattaatattatttgggcgacacggtggcgcagtgggcactgtcgctggtttgagccctggcttggtcagttggcattattgTGTGGGGTTAGCAAGTTCTCTCCgtgttgtgtgggtttcctccaggtgctccggtttaaaAAATAGAACACCTTGTAAAAAATAgttgttacgaaacaccaacatggtgcagcaaaatatcaacttcgatataaaagtaagtaagtaagtattaatattatttgtctaTGTTGCTTCTGCTTTATAGGGGAGTGTGATTTGAATATGTAATAACACACAGTAGTCTAGTAGTTACCTTTTTAACAGCTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018008 lncRNA downstream 201476 19581907 ~ 19583015 (-) True XLOC_009152
TCONS_00019142 lncRNA downstream 497891 19285164 ~ 19286600 (-) True XLOC_009147
TCONS_00017982 lncRNA downstream 1615143 18166781 ~ 18169348 (-) True XLOC_009134
TCONS_00017965 lncRNA downstream 1918928 17844191 ~ 17865563 (-) False XLOC_009127
TCONS_00019141 lncRNA downstream 2029565 17751150 ~ 17754926 (-) True XLOC_009125
TCONS_00018021 lncRNA upstream 135884 19929495 ~ 19932848 (-) True XLOC_009158
TCONS_00018023 lncRNA upstream 213364 20006975 ~ 20011629 (-) False XLOC_009159
TCONS_00018024 lncRNA upstream 213382 20006993 ~ 20009686 (-) True XLOC_009159
TCONS_00018026 lncRNA upstream 275014 20068625 ~ 20069243 (-) True XLOC_009160
TCONS_00018030 lncRNA upstream 444817 20238428 ~ 20239598 (-) True XLOC_009163
TCONS_00018020 mRNA downstream 12119 19747644 ~ 19772372 (-) True XLOC_009156
TCONS_00018016 mRNA downstream 12510 19726229 ~ 19771981 (-) False XLOC_009156
TCONS_00018015 mRNA downstream 12510 19726229 ~ 19771981 (-) False XLOC_009156
TCONS_00018013 mRNA downstream 59559 19697246 ~ 19724932 (-) False XLOC_009155
TCONS_00018014 mRNA downstream 78784 19697929 ~ 19705707 (-) True XLOC_009155
TCONS_00018022 mRNA upstream 211155 20004766 ~ 20024205 (-) False XLOC_009159
TCONS_00018025 mRNA upstream 267032 20060643 ~ 20125331 (-) False XLOC_009160
TCONS_00018027 mRNA upstream 345420 20139031 ~ 20190052 (-) False XLOC_009161
TCONS_00018028 mRNA upstream 345767 20139378 ~ 20180475 (-) True XLOC_009161
TCONS_00018029 mRNA upstream 411017 20204628 ~ 20233105 (-) True XLOC_009162
TCONS_00018019 other downstream 31517 19745731 ~ 19752974 (-) False XLOC_009156
TCONS_00018018 other downstream 36777 19745691 ~ 19747714 (-) False XLOC_009156
TCONS_00018017 other downstream 55872 19727993 ~ 19728619 (-) False XLOC_009156
TCONS_00018010 other downstream 109668 19662101 ~ 19674823 (-) False XLOC_009153
TCONS_00018007 other downstream 241557 19542820 ~ 19542934 (-) True XLOC_009151
TCONS_00018045 other upstream 985801 20779412 ~ 20781116 (-) True XLOC_009171
TCONS_00018046 other upstream 1004517 20798128 ~ 20799830 (-) True XLOC_009172
TCONS_00018047 other upstream 1016098 20809709 ~ 20811411 (-) True XLOC_009173
TCONS_00018048 other upstream 1034810 20828421 ~ 20830125 (-) True XLOC_009174
TCONS_00018065 other upstream 1155082 20948693 ~ 20956454 (-) True XLOC_009177

Expression Profile

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