RNA id: TU466041


Basic Information

Item Value
RNA id TU466041
length 1850
RNA type TUCP
GC content 0.39
exon number 4
gene id CI01000299_04131136_04133439
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 4131060 ~ 4133941 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACGTGCTTAAAGCAGATTCATACGATGGCGAATGTGAAGTGCAGCAGCGAAGGCCCTTCTAAAGAAGGAGGTGAAACTGTCAAAACTGTTTTTATTTTGGAATTAGTTTACACTTGAAAGTCTTCGAGAGTAATTGTAGTACCTATATTTTTGAATGTAGGTATAAAATAAAGTCATAGCCATAGATTTGGACTTTCTTGTTAACTAAATTTAGCAAGCTAGCTAAGTTAGCTGGTAACGATCTGCTTTCTTTTCTATGCTGTGTTTTCAGATGCGTAATATTTAACACTAATATTAGATATACCCTAACAACAGTAAATGCATAACAATGTTGAATATTATATGTCCAGCGAGCCTTTGATCCATACACTAACACAAGCTCAAAAAAGTACCATGGTGTTTTGGATTTGTACCATAAAATAGTCATTCGTGGAAGTACATGTGAGTACCACGTGAATACTATGGTACATGAATTTAAGTATATGTACTTACCATCTTACTGTCATTGTGGCATTCTTGGAAATGTCTTGACATACATAATATGGTGATTATATGGTTTAGGTATTTTACCATAGTGTAACATTTGAATACCGTAGGCGATATGGTAATAATTCCTGTGGTAAATATCAAAGTACTATGGTATTATTGTCTGATGGTTCTGTCATATATCTGACATACTTCTCAACACTCACAACTTCCAATGCTTTGCTGATAGCAGCCAGTAATTAAATCCAATTAGTGTTAATCAAATGAATCAGACTAATCAATTAGGTTTTAGGCTCAACAGCGTCTCTCTGAGCAGGTCCTCCTGGCATCCCTCATCTTTCAGGTAACTGTAGCTCACCTTTGGTCTCCAAGGCAACAGTCGCTCACCTTGGTAAGTTGTCTCGCCTCCAGCAGGACCAGAAGAGAAGGGAAGCAGTGTGAAAACTAAGACTGTCTCTTCCAGCACGGCATCAGGGGACAGTCTGCGAAAGCGGCCTGCTCATGAGATCGACCCAGAAGATGAGGCTAAAAGCAAGTCAGCTCCCCCTAAAATGTTTAAATCGGGGTTTAGCATGACTGCGAAGAAGCCTGCGTCCATCTCCATCAAGCTTGGAGCAAGTAAACCTAAGGAACCCACACCTGCCTTACCTGCCAAGAAAGCTGGACTTGCATCTGTTTTTAACGAGGATGATGATAGTGAGCCTGAAGAAATGCCACCGGAGGCAAAGATGAGGATGAAGAATATTGGCAGAGAAACGCCCACATCAGCTGGACCCAATTCCTTCAACAAAGGAAAGCAGGGATTCTCAGACCATCAGAAACTTTGGGAGAGGAAGCTCAAATCCCAGACAGATCAGTAGCATCTGGCTTCTTTCAATAGCTTGCTTTTGGGCACTGAAATATTTGTCTTATTGTCTCTTTGTTTGATAAACATTGTACAAATGTATATATGTAATGAATGTTTATGCTATCAAGCATCTTTTTATTGTAGCTATTTTGTTTTTTAGCCACGCTGTGGTTAAAAATGCCTTCCTGTGTAAGGTGCAAACAGAGAAAATGAGCATAATCTTTATTGCTGTACAATATGTGCTGCACCGACCCGTTATCATTTGCTTATAGTTTAGTTGTTCTCCAGAGAAGGAATGTAGTGGTCCAGTCATTTAGGATTGTTTTAAGTTTCATTCATGGCAATGAAAGAAGACTCTGTAGTTTATGATTCACTAATAAATGAAAAATGTAGTGTGAGACTGTGGATCTGAACAGATTTTTTTTTCTCTATTTTGTAATCAGTGTGCTAATCAGCTTTTGAAAGCAGAATTAAAGGATTAGTTCACTTCTGAATTAAAATGTCCTGATAATTTA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU466065 lncRNA upstream 1658 4128994 ~ 4129600 (+) True G405573
TU466060 lncRNA upstream 15074 4078975 ~ 4116184 (+) True G405568
TU466301 lncRNA upstream 54221 4076805 ~ 4077037 (+) True G405797
TU466061 lncRNA upstream 65693 4065131 ~ 4065565 (+) True G405569
TU466070 lncRNA upstream 218300 3893020 ~ 3912958 (+) True G405578
TU466069 lncRNA downstream 45909 4179850 ~ 4196335 (+) True G405577
TU466319 lncRNA downstream 85500 4219441 ~ 4219649 (+) True G405815
TU466321 lncRNA downstream 89220 4223161 ~ 4223448 (+) True G405817
TU466322 lncRNA downstream 90874 4224815 ~ 4225273 (+) True G405818
TU466332 lncRNA downstream 106919 4240860 ~ 4241092 (+) True G405825
CI01000299_04122601_04126314.mRNA mRNA upstream 4877 4122601 ~ 4126381 (+) True CI01000299_04122601_04126314
CI01000299_04105476_04115171.mRNA mRNA upstream 16031 4105476 ~ 4115227 (+) True CI01000299_04105476_04115171
CI01000299_03981006_04059237.mRNA mRNA upstream 72021 3981006 ~ 4059237 (+) True CI01000299_03981006_04059237
CI01000299_03594891_03678552.mRNA mRNA upstream 451646 3594891 ~ 3679612 (+) True CI01000299_03594891_03678552
CI01000299_03495286_03498691.mRNA mRNA upstream 632529 3494539 ~ 3498729 (+) True CI01000299_03495286_03498691
CI01000299_04259743_04263032.mRNA mRNA downstream 124980 4258921 ~ 4263493 (+) True CI01000299_04259743_04263032
CI01000299_04269257_04269673.mRNA mRNA downstream 134526 4268467 ~ 4269765 (+) True CI01000299_04269257_04269673
CI01000299_04472181_04474247.mRNA mRNA downstream 337015 4470956 ~ 4474271 (+) True CI01000299_04472181_04474247
CI01000299_04480751_04492829.mRNA mRNA downstream 346612 4480553 ~ 4493116 (+) False CI01000299_04480751_04492829
CI01000299_04496757_04504238.mRNA mRNA downstream 362445 4496386 ~ 4504483 (+) False CI01000299_04496757_04504238
TU466101 other upstream 976084 3154597 ~ 3155174 (+) True G405609
TU464370 other upstream 3524908 604870 ~ 606350 (+) True G403972
TU463930 other upstream 3720470 364139 ~ 410788 (+) True G403609
TU463894 other upstream 4058987 35462 ~ 72271 (+) True G403578
TU466350 other downstream 161592 4295533 ~ 4320141 (+) True G405842
TU466383 other downstream 355877 4505404 ~ 4505917 (+) True G405866
TU466374 other downstream 568441 4702382 ~ 4702508 (+) True G405864
TU466651 other downstream 790521 4924462 ~ 4927844 (+) True G406096
TU466818 other downstream 1237240 5371181 ~ 5373579 (+) True G406244

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000170 False 1142 mRNA 0.40 5 NC_007112.7 7556977 ~ 7561221 (+)
rainbow trout (Oncorhynchus mykiss) TU1733120 False 1814 lncRNA 0.46 4 NC_048582.1 7754688 ~ 7757728 (-)
eurasian perch (Perca fluviatilis) TU37840 False 1635 TUCP 0.42 5 NC_053114.1 19123566 ~ 19126376 (-)
bowfin (Amia calva) TU37840 True 234 lncRNA 0.38 1 CM030123.1 52288890 ~ 52289123 (-)
bowfin (Amia calva) TU87358 False 3291 lncRNA 0.36 5 CM030128.1 13246309 ~ 13251732 (+)
mexican tetra (Astyanax mexicanus) TU144061 True 1480 lncRNA 0.42 2 NC_035908.1 27915547 ~ 27918196 (+)
mexican tetra (Astyanax mexicanus) TU87358 True 223 lncRNA 0.36 2 NC_035903.1 17769247 ~ 17815728 (+)