RNA id: TU468580


Basic Information

Item Value
RNA id TU468580
length 17
lncRNA type read_through
GC content 0.38
exon number 1
gene id G407801
representative True

Chromosome Information

Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 5821575 ~ 5821591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTGAACTGATTGGCTTCATGTTTATGACTCTTTTCCCATAGGCCTGTGTCATTCAATGAGTGAAAAGGACAAACTGAGAATGAGGCACAGGAAAATAAACAGAGATTAAAATAATCTAACTTAACTTTATTTTTACCTTGACTGACTCTGAGTCTGAGAGTGAAAAGGGTCGATGCAAACAACAGCAGTAATGCTTTACTAAAGTTTCCAGTCCAGTGTGAAGAAGAAGAGAAAGAAGCAGAAGAAGAAGAGGAATCTCCCGCCGCCATCAGGATTTCAGTCTTTCGGATTTTGGAAGCATAAACTCTCTCTCTCTTCTTCAGCAGTATTTCAGTCATCATGTAACTTCATCAGTCAGTCACTGTTAAACTTCTCCGTTTGTCTTCAGCAGGTTTTGTTTATAAATGTCGTCAGTCGGATGGGTGTGGGTCAGTATTAATAGACAGAGAAATCAGATTTTGTTGGAATCTACAACAATATGAAGAACCTTTCAAAAATCTCCCTNNNNNTATATATAGTCTGTGTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU468628 lncRNA downstream 46034 5774249 ~ 5775541 (-) True G407848
TU468538 lncRNA downstream 181709 5634840 ~ 5639866 (-) True G407764
TU468500 lncRNA downstream 266730 5552628 ~ 5554845 (-) True G407734
TU468429 lncRNA downstream 358403 5456864 ~ 5463172 (-) True CI01000299_05457285_05462908
TU468426 lncRNA downstream 403204 5413334 ~ 5418371 (-) True G407669
TU468639 lncRNA upstream 31168 5929639 ~ 5930546 (-) True G407858
TU468606 lncRNA upstream 46904 5945375 ~ 5946025 (-) True G407827
TU468604 lncRNA upstream 65209 5963680 ~ 5969556 (-) True G407825
TU468662 lncRNA upstream 120071 6018542 ~ 6023664 (-) True G407881
TU468666 lncRNA upstream 126554 6025025 ~ 6025802 (-) True G407884
CI01000299_05802706_05815472.mRNA mRNA downstream 6103 5802504 ~ 5815472 (-) True CI01000299_05802706_05815472
CI01000299_05739937_05770480.mRNA mRNA downstream 50768 5739808 ~ 5770807 (-) True CI01000299_05739937_05770480
CI01000299_05602070_05604608.mRNA mRNA downstream 216960 5601983 ~ 5604615 (-) True CI01000299_05602070_05604608
CI01000299_05512316_05521322.mRNA mRNA downstream 300253 5512051 ~ 5521322 (-) True CI01000299_05512316_05521322
CI01000299_05478688_05502027.mRNA mRNA downstream 318307 5477482 ~ 5503268 (-) True CI01000299_05478688_05502027
CI01000299_05919510_05924061.mRNA mRNA upstream 20657 5919128 ~ 5924628 (-) False CI01000299_05919510_05924061
CI01000299_05927821_05933216.mRNA mRNA upstream 28843 5927314 ~ 5934832 (-) True CI01000299_05927821_05933216
CI01000299_05946615_05949088.mRNA mRNA upstream 47862 5946333 ~ 5949234 (-) True CI01000299_05946615_05949088
CI01000299_05974659_05985294.mRNA mRNA upstream 75920 5974391 ~ 5985606 (-) True CI01000299_05974659_05985294
CI01000299_06037407_06054548.mRNA mRNA upstream 137746 6036217 ~ 6054548 (-) True CI01000299_06037407_06054548
TU468421 other downstream 365467 5455914 ~ 5456108 (-) True G407665
TU468235 other downstream 892757 4925968 ~ 4928818 (-) True G407509
TU468104 other downstream 1270854 4475994 ~ 4550721 (-) True G407413
TU467961 other downstream 1657251 4163313 ~ 4164324 (-) True CI01000299_04158468_04164223
TU465509 other downstream 3803525 2017687 ~ 2018050 (-) True G405053
TU468694 other upstream 633530 6532144 ~ 6534655 (-) True G407899

Expression Profile