RNA id: TU464087



Basic Information


Item Value
RNA id TU464087
length 4015
lncRNA type antisense_over
GC content 0.39
exon number 5
gene id G403734
representative False

Chromosome Information


Item Value
chromosome id CI01000299
NCBI id null
chromosome length 6567443
location 254668 ~ 331840 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGGAACCAAAAACATTTGACTATATGACATAAAATAGCACATAATATATATATGCACAAATAAAACATTTAAAATGGTTACATGAAAACTAATATTATCCAAAGAGGGCTTGGTTTATAATATTCTTCTCATATTATCTCTGTGAATGTGTGTGTGCCAATGGGCTACTGCATCACTGATGGAAGTCAAGCAGCACAGCGTAAATACCCACAATCCCTTGAGAGCGGCATGGAAAACGCCACGGCGTCTCGTCGCAAACAGGAAAAGGGCATTGAAAAGCATCAACACCGTCAAACCTTTTGGCCTCTCAGTGACAATGCTCCGAAATAATAATAATAATAATAAACTCTTACATGTCTTAGTTATAGGTATAGTATATTCATATATAGATGGAGGTGAGAAGTAAATTCAGTAGACCTGTTGACACCCTAGTACATATTAATAGCTCTGAAACACAAAAGCTTAAAAACAATGGACTAAAGGTAAGGCAAAGTGTTTGGATACGCTGTGTCTGCTCAGTATATCAACTGATTCCAAAGTGCTTTTTCAACATCAGTCAATTTTTTTCATTTGGGGTGTAATAAATCCCAAATTAAGAACAACCATTACTTTCATCAATATATTTCTTTTTATTTTCTCAGATTAAATTGAAAATAACTTCTTAATTTGACATAAAATACCATGCAAGATGCTTACTGAATATTTAGTTCTCTGGTTTAACTAAAGCAATAAAACAACCATCATTGATTTGTGTTGCCATACCATATTCATTGTGCATCAGTTTGAAATGAACATCCTACAGTTACAGGAAATCAAAGTGCAATCGTTAACTCATTTAAGTTGTTGAACAAACCAGGACAACTTTCATAAATAATATAAAAAATGATCTTTACAAGTACTTGAGATCCTTTGTCAATTAAAAATAGGGAAGGGGGGGCACGAACTCTAGAATCGTTTCTTAAGTTACGTCACACTATTGTAACTGGTGAGTATTTACTACTATCTTAAACGTTACACCAATAAAGAGGCCGTTAAATGCTACCGAAAAATCTCCTGGTAATATAATCTTGACATAAAATAGGAAATGTTCCAATATCTGCTTTACAATCTAACATTTTGCAGTGCTCTAGAAAAAAAAAAAAAAAAAAAAAAAAAAATGTGGAAATAAAAGAACAAACGAAAGAATAGAATCAACTTAACAATTACATCATTTACAAAAATACCAAAATTTAGTATTCGCAACTTTAGGTTGCCACAGCAACAACTTAATATTATTATGAAATAACTATCATACTACTGAGAATTTTTTTATACATTTTTTTTCTATTTTAGTTTTTTTTTTTTTTTGTTTTTACATAACACAAGCAGTTCTACAGCCTTGCTTACGCTGCGATGCGACGTCCCGAACGCGAGATCTAGAAGCGGCTCCTGATTGGCCGAGGCCGCAGTCGCTATAAGGACAACCGCACGTAGCTAAGCCTGGCTTAATAAATTACATTCATTTTTAAAATAGGTTACACCATTGTTCTGTGTTCTAGTATTTAACAAAAACAAAGAATGAACAGAATGACAATAAAATATATTTAAATCACTTTCCACTTCAAAAATTACATTAAAACTGTAACTTTTGCACAAAAAAAGCCCTAAAAGAAAAAAAAAAAAATGACATGAATTTTTTAAAAACAAAAATGCTAAGACCAGTGCCATATTCCTGCGAAACCAAACGTCTCTTTGTGGATTGTCTGTGTTAATTGAGCACCATGAAAAGACATGATGTTTCTGATTGGATCGGTAACGCAGGCATGCACACGCTCACACCGATGCATTCAGACATGCACAAACACGCTTCGCCCATCAGAAATCAGGGAGGAGAAGAAGGCTGTGTGCACTTATTCCAGGTTAATGTTGTCAAAAGTACTGACTTTGGCACTAAGTCGGTGCTGAAATTTTAAAAATGTGACAATACCAGCATTTGGTACCCAAGTCGGTATTTTTGACAACACTATTCCAGGTAAAAAAACAAAACAAAAACAAAAACAACAACAACAAAAAAAAAACACCATCCAAATAAAAATTAAACGATGCTGTTAGGTGTTTCGTTATAGTAAGAAAACGACAGAACGGACAGTCCTGACTCAACAACAAACTGCTTAAGAACACACCGCTATGACAATCGTTTACCAAACTCATACGTCACGCGTTACAGACATTTAGCTCGTCCTGACAAAATTCCTTTACATTTCTGATGTCAATCAACATTCTACCTATTCAGTTCTGCACCAATTTCTAGCAACATCCATGTTGTGTAATGAAACAGACCATGGTGGTGTATGAAATGCATTTAAGTCTACGTGTTTCTTGTCTCTTTTCTTTTGTCCAAATGGGCCAAGATCATTTCGGGAGCTTTACTTGCTTTTTGACACCAAAGAGTGTTTTTATAACCCCCAACCCCACATAAAGTCATCTTCTCAAGATGCTTGCTGTGTAAAATATATTTTTTAGGCACTTCTACTGTTTATCAAATAAAACAGGATTATCGGCGAGAGACGCGTCAGAGATCGTCTACTGCAACGTTTCGCGCCCCCTTCCTCCTCGCGTTTTCCGTTCGCTGGGCACCGTGTGATTGGGACGACGAACAGGCCCCAGACAAATTGGAGAAGTCCGTCTCGTGTATGAGTGTGTACGAGTTTGTTTACAGCAGCTCTCCAGTTTAATGTAAGCCCTTGGCACGGGATAGAAGCCAGAGTCGACTCCCTGATGGCCAGTGTTCCCACGGACACATCGAAATCATTCACCGTCCATTTAAAAACAAAAAAGGAAGGAGTAAAACACAGTCCTTTAGCAGAGACGCAGACAGAAACATGGTTGCATGGCACGTGGTTTGCCACATTCGCACTTCCGACACCGACTGTTTATGTTCACACTTCGTGTCAGAGTAAACCTTTCTTTGGCCGTTGGGGATGAAGAACAGCGATAATCGAATCATTTCCGTTTCCAAAGACGGATCAGCTCAAGTCCAAGAAGGAGAAACTGGAGGGAGGCGCATTTTGACCAGTAGACAATCTTCGTTTTGTCCGCAATGTGACATTCGGTGTTGTGTATTAAAACAAGAAATAAAAATCAAGCAACCCCTCTTTCCCCTATCCGGAGGGTGCATGGGGATGTTTAAGACATACTCTGCAGGAGACGTCCTCCCGTTCAAGACAATCAAGCACTTAATATTAAGCACTATTTCTGACAGTGCAAACCTAGTGTGTGTGTATGTGTGTGTTTCCTTGCGTCGCTCGTCATCCGCTCAGGGTGAACATTGTGCATTTGTTTTTCATTTAAAACAACCATGGGAGAAAAATACACATTACATCTGACGGGTGACCGATCATTCAGATGAATCTCACTTATGCCTCTATGAAACGTGCTGTACATTGACATATATATATATATATTTATATATATTCATATATATTTTCTTGTTTCGTTTTTTTATATCTTTTGTTTTGAAGTTAGAAACCGGTTGAGTCACTTTTCCAAGCATAACAGGTATATGGTGTGTGTATTGTGTAGTGGGTTGCTAATGTGTTTACGCTTTAGCATGCAGGTTGCTGTAGTTCTAACGGGGAGGGCAGGTCGTATTTACACGGGGATCTTTTTGGATGTCACATTCAGACCCCCGTTGGCTGTCGAATGGGAGATGGCCGCTATTAGTGAAGCTGTCAATCTCTGCCAAGTCGTTCATCAGTCATTTAGTCCCAGGTGCACAACACTGGAGCGACAATAAGAACATGCTCCAGGTTTCCAAATGGTCTTGAGGCCAACGGTTGTGGATAACTCTACCTGAAGGCAATGGCTCTCCTTGGAACGATATCTAATAACGGTGCGTGAATGGAAAGAGCGTGTTGGTTCCTTGTGCTTTGGCAAGTCTGAGGAATTGAGATCTTTTGGGAGGCCAAGCCAATGTAGGTTGGGGGCGGCGAGCAGCTTCAAGTAGGAACGTCGTCAGAGAAGGCACTTTCTTCTG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU464146 lncRNA downstream 809 253530 ~ 253859 (-) True G403782
TU464145 lncRNA downstream 2465 251838 ~ 252203 (-) True G403781
TU464144 lncRNA downstream 4642 249826 ~ 250026 (-) True G403780
TU464143 lncRNA downstream 5893 248547 ~ 248775 (-) True G403779
TU464109 lncRNA downstream 7317 246873 ~ 247351 (-) True G403748
TU464196 lncRNA upstream 5789 317619 ~ 318293 (-) True G403811
TU464208 lncRNA upstream 50579 362409 ~ 362696 (-) True G403820
TU464209 lncRNA upstream 51063 362893 ~ 363318 (-) True G403821
TU464211 lncRNA upstream 52317 364147 ~ 376471 (-) True G403822
TU464245 lncRNA upstream 112296 424126 ~ 424334 (-) True G403853
CI01000299_00185106_00209299.mRNA mRNA downstream 45369 184774 ~ 209299 (-) True CI01000299_00185106_00209299
CI01000299_00169255_00170695.mRNA mRNA downstream 83682 169223 ~ 170986 (-) True CI01000299_00169255_00170695
CI01000299_00448948_00449565.mRNA mRNA upstream 137033 448863 ~ 449757 (-) True CI01000299_00448948_00449565
CI01000299_00452374_00452868.mRNA mRNA upstream 139511 451341 ~ 452868 (-) True CI01000299_00452374_00452868
CI01000299_00670925_00672195.mRNA mRNA upstream 358850 670680 ~ 673625 (-) False CI01000299_00670925_00672195
CI01000299_01003547_01034507.mRNA mRNA upstream 691489 1003319 ~ 1034812 (-) True CI01000299_01003547_01034507
CI01000299_01057889_01063623.mRNA mRNA upstream 745990 1057820 ~ 1063623 (-) True CI01000299_01057889_01063623
TU464604 other upstream 359004 670834 ~ 672856 (-) True CI01000299_00670925_00672195
TU464792 other upstream 758777 1070607 ~ 1075891 (-) True G404372
TU465225 other upstream 1347825 1659655 ~ 1660000 (-) True G404784
TU465428 other upstream 1543809 1855639 ~ 1880988 (-) True G404976
TU465509 other upstream 1705857 2017687 ~ 2018050 (-) True G405053

Expression Profile