RNA id: TCONS_00001533


Basic Information

Item Value
RNA id TCONS_00001533
length 5278
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_000966
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 5606460 ~ 5746030 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACACACATACTgactcactgacacacacacatacacacactcagacTCGCGCTTTCGAGCACATCTACACGCGCTGCCACAGCAGTGCGCTTCAACACGCTTCTGTGCGCAACACCAATTCCTCTTTTGCCTGGCAGTTTGGACAAAACTTGCTGCCTCCTGGGTATGACTGAACGACTAACGAGAGCAAGAAGATAGCAGAACTCTTAAACTCGGAGGGCTGCGGGCGATTAAGGGAGAAATCCCTGCGGAAACCTCAAAGCATCGGAGACCGATAAGGCAATGGAGCGCAATAACGCACGCAAATCTGAGACGGCGTTATAACGGAATACAGTTGAAGACCtctaatttagttttgtttgaagAAGAGGAGGCTGATTTATGTCCAAGCATGACTTTTTATGAATACATGAAATAGATCATGTTTTGCACACTCTGCATTTGCTGTGCGCAATGGGCTCAACAGAACTGCATTTGAATATGAAATTCTGAGCATTATTTAGACAAAAAGGCTGgttttataatattttctcaGTCTGAGTTTGCCATTTGTTCTTGAAGAAGATAACTAGTTGAACACAGCTCACTTCTTCAAGCACATTTCGGAAAGATGGATTTCTGGATATCACACCAAGGGATTGCATTTATCTTTTGCTTCGTTCTGAAAGTCAGCGCAAAAGAAAGTGAGACATGTGGAGGCCACCTGGATGCCAGCGGAGCCGGCTACATCACATCTCCAGGATACCCTCTGGAATACCCGCCCCATCAGAGCTGTCAGTGGGTGATCAGCGCACCCGAACCCTCACAGCGCATCGTGCTCAACTTCAACCCCCACTTTGAGCTGGAACGCCTGGACTGCAGGTATGACTTCATCGAGATCCGAGATGGGAATTCGGAGTCTGCAGACCTGCTGGGCAAACACTGCAGTAACATCGCTCCTCCCGCCATCATCTCCTCCGGTCCCTTCATCCACATCAAGTTTGTGTCTGATTACGCACACCAGGGTGCCGGTTTCTCCCTGCGCTACGAGATCTTCAAGACTGGAGCTGAGCATTGTTTCCGTAATTTCAGTTCCCCAACCGGAGTGATCGAGTCTCCGGGTTTCCCTGACAAGTATCCACATAATTTGGAGTGCTCCTTCATCATCATCGCTCCTCCTCAAACCGAGGTCACTCTCACCTTCCAGACCTTCGACCTGGAGAACGACCCTCTGCTGATGGGGGAAGGAGAGTGCAAATACGACTGGCTCGATGTCTGGGACGGCCTGCCGCAAGTGGGACCCTTGATCGGACGATACTGTGGCTCGAAGATCCCTCCAAAGATCCAGTCCTCCACGGGCCTTCTGTCGCTGTCCTTCCACACTGACATGGCTGTGGCCAAAGACGGATTCTCGGCCAGATATAACATGACCCACAAGGAAGTTAGCGACACGTTTCACTGTAGTAATGCGTTTGGACTGGAGTCTGGGAAGATCTCTGATGATCAGATTTCGGCCTCCACTTCGTTTTATGATGGACGCTGGCAGCCTCGTCAGGCACGTCTGAACAATGAGGACAACGCCTGGACGCCCGGTGAGGACAGCAACAAGGAGTACATACAGGTGGATCTTCAGTTCCTCAAGGTTCTGACCGGCATCGCTACTCAAGGAGCCATTTCCAAAGAGACCCAGAAGTCATACTACGTCACCACCTTCAAGCTGGAAGTTAGCACTAACGGAGAGGACTGGATGTTTTATCGGCATGGCAAAAACCACAAGATTTTCCATGCCAACACTGACCCGTCGGAGGTGGTTTTGAATCGTATCCCTCAGCCTGTTCTGGCCCGCTTTGTCCGCATTCGACCACAGACGTGGAACAATGGCATTGCACTGCGCTTTGAGCTTTATGGCTGCCAGATTACAGATGCTCCTTGTTCAGAGCTCCAGGGAATGTTGTCAGGACTCCTCCCGGACTCCCAGATCTCAGCCTCCTCAATGCGGGACCTCCACTGGAGCCCTGGAGCGGCTCGTTTGGTGGCCAGTCGATCAGGATGGTTTCCCAGTCCTGCTCAGCCTATAGCTGGAGAAGAGTGGCTCCAGGTAGACCTCGGGACACCCCGGATGGTGCGTGGAGTGATAACTCAAGGAGCGCGGAGTGGTGATGGAGGAACCAGCTCAGAGAACCGGGCTTTCGTACGGAAGTACCGCCTCGCACACAGCCTGAACGGGAAAGACTGGAACTTTGTAATAGATAGCAAGACTAGCATGCCTAAGCTGTTTGAGGGGAACACGAACTACGACACCCCAGAGCTGCGTCGGTTTGAGGAGCTGCCAGCTCAGTTTATCCGCATCTATCCAGAGCGCTGGTCTCCGGCAGGCATCGGAATGAGAATGGAAGTATTGGGCTGCAACCTGCCAGAAACCTCCACACCAGCGCTGGAGACGAGCAAACCAACACAACCGACCTCAGTAGAGACCAGCACGACACAGAAACCCAGTCCAGTAACCAGCGCTGCCCTGCCGTCTCACAAAGGACTGTGTGATTTTGAGCAGGGATGGTGTGGTTGGACCCTCGACCTGGATTCTGACTTCAGCTGGGTTATGCACAGCTCCAGCAAAAGCTCTGCCTTGGGTCAAAGTCATAATCTCTCCATGGGCTCAAACAGTTTGGGAAACTACCTGTACATCGAGGCTAGTCCAGAGACGCAGGGCCAGAAAGCTCGCCTCTTCAGCCCGGGTGTGGATCCAGACACGGGACCCCTGTGCCTGATGTTCTCCTACCAGCTGGAGGATCAGGGCACTCTGAGGGTCCTGCTGCAGAACAAACAGCAGGAGAAGACGCTGCTGTGGTCCCTCAGCGGAGACCAGCAGCCCATCTGGAGAGAAGGACGTACCATTATTCCTCGATCCCCTGATGAGTTAAAGGTGGTAATCGAAGGATTTTTCGAGGGTACCAAAGGCCACATATGGATTGATAACATTCACATGAGTGGGAACACACCGCTGGAAGAGTGCACTCAGCCGTTCTCCGCGTTTCCTCCGGACATGATCGTTAAAAAACCAGAGGTTGGAAATGGCCGTCTCTTCACCGGGAAGGACCACATAAATGCAGGTTTCCAGTTTCCAGAGTGGGGCACGGCTGAGACCCCATCGGAGCCCCCTGTGACCCATGTTATCGATAAAGACAACTCATGGCTGTACTCTCTGGACCCTATTCTCCTGACCATCATCGTCATGAGCTCTCTAGGAGTTCTTCTAGGTGCTGTTTGTGCTGGCCTACTCCTTTACTGCACCTGCTCATACGGAGGCTTAACGTCTCGCTCTTCCACCACTTTGGAGAACTACAACTTCGAGCTATACGATGGGATTAAGCACAAAGTGAAGCTCAACCAACAGCGCTGCTGCTCCGAGGCTTGAGGAAAACAGATGGGGTGATATCAAGTATCCTAAAATGACCTCAAAGTTACCCGATTTGACTCTTTGAAGAGAGACGAGCCTCATCTCTTAGTATTCCTGGAATGCATGTCCATCTCAGCTGGAGAGCTCCTAAACTGAACTTCTCCTGGAGCTTATTTTCCAAGCAGTGCTTACTCAGCTCTAACGCTGCTGCCAAGGACTTCCTCGTCTTTCACTGGATTACATCAAAAAAAGGGGAGCGTTTGGTGCCACAAAGACTGAAACACTTTCCAGGGCTCAGCCTCAAAAATAAATGTCGATACATATCAATGTTCTGCTATTCCAAAAAGATAATAGTATATCAGCTTAGATTTCTAAGAGGTCTAGTTTTGAAAATGGGAGATCTGTGGCCGGACCTTCGAGCCATGAACTTCTGTCCACCGTCATTCCCCAAAGTACTTTTTGTGGCCTAGGATATGGTGCATTGTTTTAAAAGCTTTGATGGGTTGGTTTAATGTTGTTCTATTTGGGTTATTTTTATTTCCTTCGCAGAAAAGTTTGCCATCATTATTGTGTTTACAACACCCGACCATTTTGTGTTTCTCTTGTAATTCTGACAGTTTGGAAATGGAAACGACAGATAAAAGGTTCTTATATTTAGTTTTAGGCATTATGTGTTTGGTGGATtgtgttctgaaaaaaaaaggcACCGCACTTGTCTAAAACAATTGAGGATTTTGTCAGTGCAACCTATGGATTGCTGTAACCGAGAGACAGCTAACGTTGTGAGCTTTGGTCTAGTAAACAGGCATTAAGTAATGTGGGGAAAGGCTGCCGCATACTGAAGGCATGGATTTGAATTCTCTTACTTCACTCCGGGCCTTAAAGAATGCTACTGCTGTTGGCTCAAATAGGTTCATTTCCGCTGcttgtattttttaaaagctcTAAAATCGACACCATTTTGCTGTGCCAGTCATTTATAATACTGTACATCTCGGCTTTAGGGTCAAGCAGATATTTTTTACACATCAAAATGATTGTTTGAAGTCTGTAAGAGGTCAAACATTTTAGATTTGGATTGATTTGAAGGATGAAAACAAAAGTGTATacagaaatattttatatatttttaaaagtgaaagcCAAGATGAGTGTTATGAAACCTGTCAATGGTGgaaaatattaattcatatatatattaaaacattttgttcTTTTAGGTTACAGTTTTTGCAAACGGGTTAGGACCTAACACTGAGCCTTGAGGAACACCAATACTTTAAAATGCAACACCTTTCCTCTGTTTATTTCCCTGATCTTTcccttttcagattttttttgtttccatGCTAAGGCTTTATGTTAACAGGAGACAGGTTGGTTGTAAATCTGCTCCCCTGTGGTTTTCAAAGACTGAAAAAAAGGCGGAAGACAGATGCCGTAAATCTTTACCTACTTGCTCAGATGGGATTCCTCAGCCTCATGCTCAAAAACACAATGGAGTCGGTGGAAGTAAATGCACCCAAAGCACACTACACCTCTGCAGAATAAGACACACGATGAGAGTCTGGGATCTCCGATAAAGAGTTTTAAGGCACTGGTAGGCAAGCTTAGATATTTCTACTGAACCCTGCTTGATCCACACATGTACTTCTTGAAGAGTCTTGCTACTGGACCCCTGGACATTTGCAAGTGCCTTGGAGCTACTCTGTTCCAGCCTCGGCTTTGGACCTGAAAAAGACTTCTTTGGAGCGTTTGTCTGTCTTAAACACTCGATATACTTGAGAAATCACAGCACTGGGTTAAATCCCAGTCTCTCTTTGGACACTTTGTACAGGAAATGTGCtttttatgatgatgattattgttattatgattatttaataaaGGATTGTTAACATA

Function

GO:

id name namespace
GO:0030947 regulation of vascular endothelial growth factor receptor signaling pathway biological_process
GO:0001755 neural crest cell migration biological_process
GO:0030154 cell differentiation biological_process
GO:0038084 vascular endothelial growth factor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0001525 angiogenesis biological_process
GO:0001570 vasculogenesis biological_process
GO:0007399 nervous system development biological_process
GO:0007411 axon guidance biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042802 identical protein binding molecular_function
GO:0017154 semaphorin receptor activity molecular_function
GO:0005021 vascular endothelial growth factor-activated receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040611-2 Enables identical protein binding activity. Acts upstream of or within neural crest cell migration; regulation of vascular endothelial growth factor receptor signaling pathway; and vasculogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in axial vasculature; cranial neural crest cell; fin bud; and nervous system. Orthologous to human NRP2 (neuropilin 2).

Ensembl:

ensembl_id ENSDART00000150863

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003316 lncRNA downstream 63397 5536338 ~ 5543063 (-) True XLOC_000965
TCONS_00001531 lncRNA downstream 94798 5509804 ~ 5511662 (-) False XLOC_000965
TCONS_00001530 lncRNA downstream 96875 5506524 ~ 5509585 (-) False XLOC_000965
TCONS_00003315 lncRNA downstream 254018 5350872 ~ 5352442 (-) True XLOC_000962
TCONS_00003314 lncRNA downstream 409739 5195698 ~ 5196721 (-) True XLOC_000961
TCONS_00003317 lncRNA upstream 268700 6014730 ~ 6024808 (-) False XLOC_000967
TCONS_00003318 lncRNA upstream 275486 6021516 ~ 6024808 (-) True XLOC_000967
TCONS_00003319 lncRNA upstream 313996 6060026 ~ 6085752 (-) False XLOC_000968
TCONS_00003320 lncRNA upstream 413601 6159631 ~ 6173701 (-) True XLOC_000969
TCONS_00003321 lncRNA upstream 474851 6220881 ~ 6225273 (-) False XLOC_000970
TCONS_00001529 mRNA downstream 63395 5504128 ~ 5543065 (-) False XLOC_000965
TCONS_00001528 mRNA downstream 63895 5504128 ~ 5542565 (-) False XLOC_000965
TCONS_00001532 mRNA downstream 63895 5536338 ~ 5542565 (-) False XLOC_000965
TCONS_00001526 mRNA downstream 150958 5449777 ~ 5455502 (-) False XLOC_000964
TCONS_00001527 mRNA downstream 150962 5449870 ~ 5455498 (-) True XLOC_000964
TCONS_00001535 mRNA upstream 52518 5798548 ~ 6028876 (-) False XLOC_000967
TCONS_00001536 mRNA upstream 322406 6068436 ~ 6085750 (-) True XLOC_000968
TCONS_00001537 mRNA upstream 472602 6218632 ~ 6225285 (-) False XLOC_000970
TCONS_00001541 mRNA upstream 657521 6403551 ~ 6494384 (-) True XLOC_000972
TCONS_00001544 mRNA upstream 1816286 7562316 ~ 7570181 (-) True XLOC_000976
TCONS_00001523 other downstream 527972 5078371 ~ 5078488 (-) True XLOC_000959
TCONS_00001521 other downstream 1395808 4210498 ~ 4210652 (-) True XLOC_000957
TCONS_00001518 other downstream 2308211 3298112 ~ 3298249 (-) True XLOC_000952
TCONS_00001517 other downstream 2308372 3298006 ~ 3298088 (-) False XLOC_000952
TCONS_00001516 other downstream 2308524 3297848 ~ 3297936 (-) False XLOC_000952
TCONS_00001538 other upstream 474851 6220881 ~ 6222249 (-) False XLOC_000970
TCONS_00001542 other upstream 707374 6453404 ~ 6453519 (-) True XLOC_000973
TCONS_00001543 other upstream 1396009 7142039 ~ 7142143 (-) True XLOC_000974
TCONS_00001545 other upstream 1828321 7574351 ~ 7603573 (-) False XLOC_000977
TCONS_00001549 other upstream 1886089 7632119 ~ 7650072 (-) False XLOC_000978

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_02850281_02876863.mRNA True 1251 mRNA 0.54 8 CI01000299 2850281 ~ 2876863 (-)
rainbow trout (Oncorhynchus mykiss) TU1755992 True 1254 lncRNA 0.46 2 NC_048582.1 28124612 ~ 28125902 (-)