RNA id: TU469405



Basic Information


Item Value
RNA id TU469405
length 751
lncRNA type antisense_over
GC content 0.37
exon number 2
gene id G408494
representative True

Chromosome Information


Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 1005678 ~ 1006915 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CACTACCCTGTATGTCCTCTGAAACTCTGTACAGCAGTTTGTTCAGGGTCATTTAAAGAGAAGAAGCCTTAAATAGGCTCGTTTTAGCTTCCGTTTTAGGAGCACACGTCTATATTCGAACTTTTTTGTTACATTTTGATAAGTTGTAAAGCAGCCCAGTGTTTTCGAACAGAGGGTTTTATACATTCACAGTAAAGCCACTGAATGTTGAATCACAGCTTTGATGAAATATAAGGCACAATGTTATGCTATAAATGGTAATATCGACAGCATGTGGTAGCAATTTACATAATACTGCACAATTATGCCTCTTTAAGCCTTGATGAATACTTTACAGTGATTTACTTCCATAATATTTTCATGGTTTTACACAGAATTCTTCCCTTCGGTTTTGCTTCCTCTGAGTGCAACTGACCACCGCTGGGTCAATAATAAAGAGTACACTTAAAGTGCGCATGAGAAATTTAACATACAATCAATAATCTGTCATATCCTTTCTGGTTCATATTTGATTTCAGGCTGGAACCAGAACCACCACTGTCCACGTACTGAGATAATGTCAGTTGAGATGTTAAGATCATAATTTCAGCAGCAATTAGCAATTCAGAAAGAGCACTGATGATTCACGTTTACATCCAACTGATTGTGAAGTTATGACTGAGGTTCAGACCCAAGTCTGTTACTGTCAGCACCTAGACAGACATAAGACAATAAATACATTTCTTTAAAGCTTGTTTTACATAAGTCTTTT

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU469407 lncRNA upstream 6293 999103 ~ 999385 (+) True G408496
TU469434 lncRNA upstream 9705 995580 ~ 995973 (+) True G408522
TU469433 lncRNA upstream 10180 995090 ~ 995498 (+) True G408521
TU469406 lncRNA upstream 12849 992278 ~ 992829 (+) True G408495
TU469413 lncRNA upstream 18031 987194 ~ 987647 (+) True G408501
TU469421 lncRNA downstream 48901 1055816 ~ 1066158 (+) True G408509
TU469414 lncRNA downstream 127256 1134171 ~ 1134489 (+) True G408502
TU469437 lncRNA downstream 131509 1138424 ~ 1138656 (+) True G408525
TU469440 lncRNA downstream 134223 1141138 ~ 1141432 (+) True G408528
TU469441 lncRNA downstream 134956 1141871 ~ 1142105 (+) True G408529
CI01000300_00864011_00867698.mRNA mRNA upstream 136907 862740 ~ 868771 (+) True CI01000300_00864011_00867698
CI01000300_00807040_00826385.mRNA mRNA upstream 179243 806846 ~ 826435 (+) True CI01000300_00807040_00826385
CI01000300_00781242_00787814.mRNA mRNA upstream 217527 780675 ~ 788151 (+) True CI01000300_00781242_00787814
CI01000300_00776177_00776812.mRNA mRNA upstream 228740 776017 ~ 776938 (+) True CI01000300_00776177_00776812
CI01000300_00740073_00744573.mRNA mRNA upstream 259271 739096 ~ 746407 (+) True CI01000300_00740073_00744573
CI01000300_01115718_01128729.mRNA mRNA downstream 107883 1114798 ~ 1128760 (+) True CI01000300_01115718_01128729
CI01000300_01128973_01131417.mRNA mRNA downstream 121897 1128812 ~ 1131441 (+) True CI01000300_01128973_01131417
CI01000300_01225430_01228695.mRNA mRNA downstream 218515 1225430 ~ 1228987 (+) True CI01000300_01225430_01228695
CI01000300_01241607_01253459.mRNA mRNA downstream 234692 1241607 ~ 1254009 (+) True CI01000300_01241607_01253459
CI01000300_01272675_01273342.mRNA mRNA downstream 265760 1272675 ~ 1273753 (+) True CI01000300_01272675_01273342
TU469422 other upstream 28579 976600 ~ 977099 (+) True G408510
TU469410 other downstream 10152 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 626115 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 742985 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 742985 1749900 ~ 1759036 (+) True G408928
TU470056 other downstream 1306494 2313409 ~ 2313894 (+) True CI01000300_02313596_02320912

Expression Profile