Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU469410 |
| length | 1135 |
| RNA type | TUCP |
| GC content | 0.47 |
| exon number | 4 |
| gene id | G408498 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000300 |
| NCBI id | null |
| chromosome length | 11740502 |
| location | 1017067 ~ 1020734 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU469405 | lncRNA | upstream | 10152 | 1005678 ~ 1006915 (+) | True | G408494 |
| TU469407 | lncRNA | upstream | 17682 | 999103 ~ 999385 (+) | True | G408496 |
| TU469434 | lncRNA | upstream | 21094 | 995580 ~ 995973 (+) | True | G408522 |
| TU469433 | lncRNA | upstream | 21569 | 995090 ~ 995498 (+) | True | G408521 |
| TU469406 | lncRNA | upstream | 24238 | 992278 ~ 992829 (+) | True | G408495 |
| TU469421 | lncRNA | downstream | 35082 | 1055816 ~ 1066158 (+) | True | G408509 |
| TU469414 | lncRNA | downstream | 113437 | 1134171 ~ 1134489 (+) | True | G408502 |
| TU469437 | lncRNA | downstream | 117690 | 1138424 ~ 1138656 (+) | True | G408525 |
| TU469440 | lncRNA | downstream | 120404 | 1141138 ~ 1141432 (+) | True | G408528 |
| TU469441 | lncRNA | downstream | 121137 | 1141871 ~ 1142105 (+) | True | G408529 |
| CI01000300_00864011_00867698.mRNA | mRNA | upstream | 148296 | 862740 ~ 868771 (+) | True | CI01000300_00864011_00867698 |
| CI01000300_00807040_00826385.mRNA | mRNA | upstream | 190632 | 806846 ~ 826435 (+) | True | CI01000300_00807040_00826385 |
| CI01000300_00781242_00787814.mRNA | mRNA | upstream | 228916 | 780675 ~ 788151 (+) | True | CI01000300_00781242_00787814 |
| CI01000300_00776177_00776812.mRNA | mRNA | upstream | 240129 | 776017 ~ 776938 (+) | True | CI01000300_00776177_00776812 |
| CI01000300_00740073_00744573.mRNA | mRNA | upstream | 270660 | 739096 ~ 746407 (+) | True | CI01000300_00740073_00744573 |
| CI01000300_01115718_01128729.mRNA | mRNA | downstream | 94064 | 1114798 ~ 1128760 (+) | True | CI01000300_01115718_01128729 |
| CI01000300_01128973_01131417.mRNA | mRNA | downstream | 108078 | 1128812 ~ 1131441 (+) | True | CI01000300_01128973_01131417 |
| CI01000300_01225430_01228695.mRNA | mRNA | downstream | 204696 | 1225430 ~ 1228987 (+) | True | CI01000300_01225430_01228695 |
| CI01000300_01241607_01253459.mRNA | mRNA | downstream | 220873 | 1241607 ~ 1254009 (+) | True | CI01000300_01241607_01253459 |
| CI01000300_01272675_01273342.mRNA | mRNA | downstream | 251941 | 1272675 ~ 1273753 (+) | True | CI01000300_01272675_01273342 |
| TU469422 | other | upstream | 39968 | 976600 ~ 977099 (+) | True | G408510 |
| TU469837 | other | downstream | 612296 | 1633030 ~ 1634969 (+) | True | G408910 |
| TU469855 | other | downstream | 729166 | 1749900 ~ 1759036 (+) | False | G408928 |
| TU469856 | other | downstream | 729166 | 1749900 ~ 1759036 (+) | True | G408928 |
| TU470056 | other | downstream | 1292675 | 2313409 ~ 2313894 (+) | True | CI01000300_02313596_02320912 |
| TU471035 | other | downstream | 2250951 | 3271685 ~ 3272398 (+) | True | G409984 |
