RNA id: TCONS_00000189


Basic Information

Item Value
RNA id TCONS_00000189
length 3662
RNA type mRNA
GC content 0.42
exon number 2
gene id XLOC_000096
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 8534698 ~ 8540050 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ACATACTTGGGTTCATCTCATGttgaattttaaatatattttcactgTTTGTAGTTCTGTAACAAGTCAGTcaagaatgtttatttatttatttatttatttaaaaagtaataatttaaatgttctttaaatGCTGCTGATTAATCAATAAAGACATTAACAGTCTTGCTGAAGACTTTGAGGtagttaaatatataataattatatgtttACACAGTCCTCATACCTTTACCTGAATATCATTTCATAATACTTTTCACACCCTTGTCTGGTTTGTTAAAAACAATTCGTGCCACTATGATTGGGTCTCCAGACTTGGTAGCTTTCACCAAAGAAACAGATTTCAGTGAAATAACCACAGACTCTTCGGTACTTCCAGAGGATCTGTCTGTGCCCATGTATCCATACACTGGGGATGCCACCCCATGGTCCAAGATATCTAGTGCCAAGTTAAAGAAAGATTTCATCCTCATATCAGAGTTTTCAGAGCAAGTTGGCCCCCAGCCATTACTTACAGTTCCTCTTGAAACTAAAGCTTGTGGGACTTTTGATTTGAACTACTTCTCTCTTCGGATCATGTCAGTGGACTATCAGACTTCCCTGGCCGGCTCTCCAGGTTACGGTTCCTTCAAGCTGAACTTTGTAGAAGACTCAAAGGTGGTTTTAGCAGACTCAAGAGAAGGAGTATTTGCATATGTGCACCACCTGACCCTCTATGACCTGGAGGCTCGAGGTTTTGTGCGGCCTCTTTGTCTTGCCTATGTGTCGTCTGATGAAAATAAAATCATTCAACAATTCCAAAGGATTTCCACAGAATTCAACAAAGTCTCAGAATGTCTGAAAACTGGAAACAGGAAGAACTTTGCGAATGAACTGGAGGTAAAGCTTAGAGATTTGGAGTATACAAGAGTCGTGTTACAGAAAGAGTTAAATACTGTGTCTGTAAAGTGCAGCAGTGAAAGGGAACCAATATTAAATGGTGTACATTCATTTGAGAGGAATGCAGATGAGGTGAAACTGAACGAGAAATCCTCTCACACAGATGAAATCTCACCGCAAGAGAAAGACGGATGTGGGAATTCTAGAAAGGTGGAAGTGAAGCTTGAAAATGAGAATAGGTCACATTTTGAACTTGAACAGTACGGGAAACAAAGAAAGGACAAACCGGATAAAACATCATGTCCAATGCCTTTGGCTAACAAAAATGATGAGTTGGCCAGTGTAGAAAAACTGATTCAAGACTATAAAAGCCTTCTAAAGCAGGTCACTTGTTACCCAACTAGAAAGCTTAGAGACTCTGAATACTCCCCTTATGAACCTGATGACCTCCCTCAGTCTTTTGACCTCGACCTGGACAGTCAGTTTTCCGGGCCAATGCTAGAATGCAGTGTTTTTACTTATACAAACACACCCTCACAAACTCTGCAGCAGATTAACTCCACGTCATCCAGCCGATTTGACAAGCGTCTGAAAACTCTCGAGGAATTGTGTGATGACTACTTCTACCAACAAGCACTGCAGCAACTGTACTCTATCGAGAGAACGTTCAGAGGTGACGCCTGCTATCTCTACACTCAACAACTCTGCCGAAATCTCCTCCGCAACCTCAAATCTACTAATTTCTTGTTTGAGGATCTGTGCGACCTGAACGATGATGTAGGGTTACAGATTGGGCAAAGCACAATCCAGCAAACATCCTTTCTTCCTGCACCCTCATTTCTAAGTGGACCGGTCAGTCTTGAGTCATACGCATCTTGTGTTGAAATGGTGCCAATAAAACTTGAGTTGGGTGGATCCAGCCAATCTCAAGTTCAACATAGCACTTTAAATACACCTTCAGAGGACAACCGACCCCAAGTAGCAGACAAATCCCCAGCAGAGGTTGAGATGAAAGATGAGATCATTTCAGCTCCAGATTGTCAAGGAAATGTGGAAAGTGTCTCGAATTTGATGAAAACCAGTATTAGTAGTGGAGACAGTATTGAGGTGTTGGGAACAGAGAGGTCATTTAGATCCCAGGGGGCAAATACGCCAGTGGAAACAGCAATGCACAGACCTCCACCTTTGTCTAGTGCCACTGCACTGGAAGGTCTAAAGCAAGGAAGGGTGCCTACCAGACGAACATGCAGTGAAGACAGCATTGAGGTGCTTTGCATAACAGAATCCATCTTACCTGATGAACTGCGTGCCTCATACCCCTGCGCAATTGATGAAGAAAGCCCAGAGCAAGAGACTGATGAGAAAAACTCGTCTCAATATCAAGAAGACAACAATGAAAAGAGTATATATGTTCAGGGAAAGATCTCTGCAGATCATGAAAATGCATGTTTGAAAAAGCTACATCCATCAGTCACTGTAACCCCACCAGACTGCCCTTTGACTCTAGAAGAAACAAGCTTTCAAGACTCTTGTCAAGCAACAGAATCAGCCACTATGTTGTTGTTAGATGAGCCCAGCCGGATGGTACCTGACGATTTATCAGACTGCTTCAGCTATCGGAGCACCACTGCATCCACGACCTCCGAATGCACTTTCCCTGCGTGTCTTCCCAAGGACAAAAGAGAAGGTGGGACCAGACGGAGACGAGGCAGAGTAGGAAGAGCAGCACTTCAGTTCATGCGGCAGTTTCCCTTTGCAGTGCATGCAGTGTTTAGCCTTCTAAGTGGCCGAACATTGGTGGTACTAGGAAGTGAGGAGGCTGCTGTGAGACGACTAGTTACAGCACTGTCCGTGTACCTGCCACATCTGACTAAATACAAAGACAGCATCCAGCCTTGGACTTCAACACCACTGCAGCTTACGGACCTGCTCAACTGGAAACTCATTGGTTTTGACAGGATGTGCAGTTTTAATCCCTCAAGTCTGCCTCACTGCCTGGACCATTACAGCCGGTACCTCAGTATCCTAGATGTAGATCAAAAAACCCTGCACTGCCCGACCTACAGTGGTTCTCTCATCAACCTGCTGGTGGAACCCAAGAGCCACTTTAAACGTGGAAACACCTACTTCACATTCGCTCAAAGTGTGCAAAGCAAGCTCGTCACCAAAGCATTCCTCTTAACATTCTCACATGGTCACCCTTCACCCAGCAGGCCCCAGGGAAGCTCAGGGACAGAATGTTTTCTTTCTGAACTTCACACTGATGACAAGAAAATCCTTCGCTATTTATCTGAACTCATCAAACTGCACTTCATGGAGGTTACTCCCAATGTGCTCCTATTCAGCTACACCACAACATCCATCTTCAAACTGTGAAAGTCATTCACAAAAACTACTCAAAGATTTGTGCAATGTAGTGTTGTAATACTTGGCTTTGACTGCAGACACAAAGCTGTGTTGCTCAGCTTTAACATTATATTTACAGTTTCTGCATGTTGTGATATCTTGTTTACAAAAGGCACTTATACAGTAATTATGGCTTAATTGCTTGTGAAAAGTTCCCTGAGAATTGCAATCATTCACAAGCTTAAATGAGCTACTGTATAACAAAGCAATATTGAACAGCTCTGTATCAGTTGCATTTGAATCttaactatttatttacaataccacTAATGTTTAAAGACTTGAAACTCTGTTTGCTGAATATAACTGTGCAAATAACAAAATCAGCCTTATTAAaaagtataagaaataaaaaattgatCTTAACTACAATAAAA

Function

GO:

id name namespace
GO:0010629 negative regulation of gene expression biological_process
GO:0006914 autophagy biological_process
GO:1903432 regulation of TORC1 signaling biological_process
GO:1902902 negative regulation of autophagosome assembly biological_process
GO:1901098 positive regulation of autophagosome maturation biological_process
GO:0032008 positive regulation of TOR signaling biological_process
GO:0032045 guanyl-nucleotide exchange factor complex cellular_component
GO:0005634 nucleus cellular_component
GO:1990316 Atg1/ULK1 kinase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function
GO:0004860 protein kinase inhibitor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061122-1 Predicted to enable protein kinase inhibitor activity. Predicted to be involved in negative regulation of macromolecule metabolic process; regulation of TOR signaling; and regulation of macroautophagy. Predicted to act upstream of or within autophagy. Predicted to be located in cytoplasm. Predicted to be part of guanyl-nucleotide exchange factor complex. Orthologous to human SMCR8 (SMCR8-C9orf72 complex subunit).

Ensembl:

ensembl_id ENSDART00000021504

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002810 lncRNA upstream 860469 7672121 ~ 7674229 (+) True XLOC_000087
TCONS_00000171 lncRNA upstream 973844 7556999 ~ 7560854 (+) False XLOC_000086
TCONS_00000166 lncRNA upstream 980483 7546683 ~ 7554215 (+) True XLOC_000085
TCONS_00000161 lncRNA upstream 994982 7529853 ~ 7539716 (+) False XLOC_000085
TCONS_00003026 lncRNA downstream 33727 8573777 ~ 8575057 (+) True XLOC_000097
TCONS_00000190 lncRNA downstream 35257 8575307 ~ 8577274 (+) True XLOC_000098
TCONS_00000192 lncRNA downstream 47180 8587230 ~ 8590636 (+) False XLOC_000100
TCONS_00003027 lncRNA downstream 47295 8587345 ~ 8590636 (+) False XLOC_000100
TCONS_00003028 lncRNA downstream 48182 8588232 ~ 8590636 (+) True XLOC_000100
TCONS_00000187 mRNA upstream 2689 8521323 ~ 8532009 (+) False XLOC_000095
TCONS_00000186 mRNA upstream 2691 8521323 ~ 8532007 (+) False XLOC_000095
TCONS_00000188 mRNA upstream 4885 8521332 ~ 8529813 (+) True XLOC_000095
TCONS_00000185 mRNA upstream 18103 8508753 ~ 8516595 (+) True XLOC_000094
TCONS_00000182 mRNA upstream 27468 8442071 ~ 8507230 (+) False XLOC_000093
TCONS_00000191 mRNA downstream 39147 8579197 ~ 8586066 (+) True XLOC_000099
TCONS_00000193 mRNA downstream 53510 8593560 ~ 8597015 (+) True XLOC_000101
TCONS_00000194 mRNA downstream 61885 8601935 ~ 8610564 (+) True XLOC_000102
TCONS_00000195 mRNA downstream 122480 8662530 ~ 8670486 (+) True XLOC_000103
TCONS_00000196 mRNA downstream 154146 8694196 ~ 8702684 (+) False XLOC_000104
TCONS_00000154 other upstream 1470755 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 1746894 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2349166 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3032614 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3084254 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 614044 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 614943 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 678598 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 1511724 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 1511734 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00390712_00395191.mRNA True 3608 mRNA 0.42 2 CI01000300 390611 ~ 395743 (+)