RNA id: CI01000300_00390712_00395191.mRNA


Basic Information

Item Value
RNA id CI01000300_00390712_00395191.mRNA
length 3608
RNA type mRNA
GC content 0.42
exon number 2
gene id CI01000300_00390712_00395191
representative True

Chromosome Information

Item Value
chromosome id CI01000300
NCBI id null
chromosome length 11740502
location 390611 ~ 395743 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAATCACAATTAAATGTGTGAAACATAATTTAAGAAGTATAATTTCACAATATTTTTACACCCCTGTCCGGTTTGTTTCAAACACTTTTTGCCACCATGATTGGTTCTCCAGACTTGGTGGCTTTCACTAAAGAAACAGATTTCAGTGAAATAGACCCATCAGCTCTTCCAGAGGAACTGTCTGTGCCCATGTATCCCTACACTGGGGACATCACCCCATGGTCCAGGATGTCTGGTGCTAATTTTAAGAAGGACTTTATCCTTTTATCAGAGTTTTCGGAGCAAGTTGGGCCCCAACCTTTGCTTACTGTTCCTTCTGAAACCAAGGCTTGTGGGACATTTGATTTGAACCACTTCTCCCTTCGAATTTTGTCAGTGGACTATCAGACCTCCCTCGCCAGCCCAGCAGGTTGTGGCTCTTTGAAACTGAACTTTGTAGAAGACTCAAAGGTAGTTTTAGGGGATTCTAGAGAAGGAGTATTTGCATATGTGCACCACCTTACGCTCTATGACCTGGAGGCTCGTGGATTTGTGCGACCTTTCTGCCTGGCCTATGTGTCGTCTGATGAGAATAAAATCATACAACAATTCCAGCAGCTTTCCACAGAGTTCTCCAGAGTCTCTGAATGTCTGAAAACGGGGAACAGGAAGAACTTTGCGAATGAACTGGAGATAAAACTAAGAAATCTGGAGTATACAAGAGTCATGTTACTTAGAGAGATAGAGAGAGAGTTAAATAAAGCATCTGTAAAATGCACCAATGAAAGGGAATGGATGATGAATGGTATACCTACATTAGATAGAAATACAGAAGATGTAAAACTCAAAGAGTGTGAAACTGAAATAAAATTTCAGAAAGACGGATGTAGGATTTCAGGGAAGGCAGAAGTAGAGTGTGAAAATGAGAACAGGTCATGTATTACACATGAGAAAGATAAACGGTTTGGGGATCGAAGGAAGGACAAGCAGGGTAATATATCTTTCCCAATGCCATTGGCTAACAAAGAACAGGAGTTGGCCACTGTAGAAAAATCAATTCAGGATTATAAAAGCCTTTTAAAACAGGTCACTTGCTACCCAATCAGGAAGCTAAGAAACTCTGAGTACTCTCCTTATGAACCAGATGACCTCCCTCACTCTCTGGAACTTGACCTGGATGATTTAAAGCACGATCAGCTTGCTGGGCCAATGATAGAAAGCAGTGTTTTTACTTACACAAACACACCCTCGCATTCTTCCCGATTTGACAAGCGTCTGAAAACTCTTGAGGAATTGTGTGACGACTACTTCCACCAACAGGCTCTACAGCAACTGTACTCCATTGAGAGGACATTCAGAGGAGATATTTGCCATCTCTACACACAACAACTCTGCCGTAATCTTCTCCGAAACCTTAAATCTACCAATTTCTTATTTGAGGATCCATGTGACTTGGAAGGTGCTGGATTACAGACTGGAATAGCTGGTCAACATTCAGTCCAACAACCCTCCTTTCTTCCTGCACCCTCAATTCTAAGTGAACCTGTCAGTCTTGAGTCATATGCCTCCTGTGTTGAAATGGTGCCAATCAAACTAGAGTTGGGTGGATCTAGCCAATCTCCAGTTGTACCCAGCTCTGTAAATACCCCTTCCGAGGATAGCCTACCCTTGACATCCGACACCGCCCCAGTAGAAGCTGAAATGGAAAATGAGGGAGCAGTTTCAGCTCTGGATTGTCAAGAAAATGTGGAATATGTTTCAGCTTTGATGAAGACCAGTATTAGTAGTGGAGACAGTATTGAGGTCTTAGGGACGGAGAAGTCCTTCAGATCGCAGGGTTCAAATTTACCAATGGATACAGCAATGCAAAGACCACCACCTTTGTCCACTACAGCTGCATTGGAGTGTCTAAGGCAAGGGAGGGTACCTACCAGACGGACTTGCAGTGAAGACAGCATTGAGGTGCTTAGCACGACAGAATCCATCCTACCAGAAGAACTGCGTGCCTCATACCCTTGCGCAATTGATGAGGAAAGCCCAGAGCAAGAGAATGATGAGAAAGACGTGCAAGACAACAAAAATGCTGAATGTGTTCTGGATGTGGGCAATGTTCCTGGAGATCATGGAGGTGCCCGTTTGGTGGAGCCGCAAGGTTTTTATCCTGCCGTCACCCTGACACCACCTGACTGTCCTATTACTTTGACCCTGGGTGGGTCAAGCTCCCAAGATGCTTGTCATGCAACAGAATCACTTCCTTTCTCATTGTTAGATGAGCCCTGTCGGACAGTACCTGATGATTTGTCAGACTGCTTCAGCTACCAGAGCACCACTGCCTCCACAACCTCTGAATGCCCTTTCTCTGTTTGTCTTCCCGGGGAAAAAAGAGAAGGTGGGACCAGACGGAGGCGTGGCAGAGTAGGGCGGGCAGCATTGCAGTTCTCGCGACAGTTTCCCTTTGCAGTTCACGCAGTGTTTAGCCTTCTAAGTGGCCGAACATTGGTGGTCCTAGGCAGCGAGGAGGCTGCAGTGAGACGACTAGTTACAGCACTTTCTGTGTATGTGCCACATCTGAGTAGATACAGAGACAGCATTCAGCCTTGGACTTCAACGCCGCTGCAGCTTACTGACCTGCTCAACTGGAAACTTATCGGCTTTAATAGGATGTGTGGTTTTACAAATTTGCCTCACTGCCTGGGCCATTATAGCCGATACCTCAGTGTTCTAGATGTGGATCAAAAGACACTGCGCTGCCCAACCTACAGTGGTACTCTAATCAACCTGCTGGTGGATCCAAGGAGCCACTTCAAACGTGGAAACACCTACTTCATGTTTGCTCAAAGTGTGCAAAGCAAGCTTGTCACCAGAGCATTACTTTTAACATTTTTACATGGTCACCATACAGCAAGACCACCTTGGGAAAATACAAGGACAGAAAGTTTTCTTTCTGAATTTCACAAAGACGATAAGAAAATACTCAACTATTTATCTGAGCTCATTAAACTTAACTTCATGGAGATTCCACCCAACATCCTCCGATTCAGCTACACCACATCCTCCGTTTTCAAACTCTGAAACAATCGTTCACAAAAACTAGTCAACGATTTGGGCACTGTACAGTAGTTATACTTGGCTTTGATTGCATTCAAACACATCTAGTTGTTTTTGCCCGGCTATAACAGTATAATCTGTACATTTTCTGCATGCTTTGAAATTTTGTTTACAAAGGCAGTTGAATAGAATATTTACGGTAATATTGTGCAAAGATCCCTAAAAACCGTCATAGGTCACAACCTTAAATGATCTGTAACAAAGCAATATTAAACAGCTTATCAGTGTTGCATTTGAAACTTTGTAATTTATTTAAATTACAAAGATTTGTATATGGTTCTGTTTCTGAATATAATTGTGCTTTACATGCTCCAGGTATTAATCACAGTACTGTAATGTTGAAAAATACTGAAATTGAAATACTATTTCAATTTCCCAAAAAAGAAAAAACACTTGACAATGGAAAAAAATTACCACTACCACTTATAACCTTTGAAAACGTTAAAGGCACTCTTTCTGTACATTAAAACTGTACAGTTTGTTTATCTTGAAGAGTCAAATGTTAATATATACATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU469050 lncRNA upstream 17495 372900 ~ 373116 (+) True G408197
TU469014 lncRNA upstream 69535 320877 ~ 321076 (+) True G408172
TU469013 lncRNA upstream 69768 320609 ~ 320843 (+) True G408171
TU469008 lncRNA upstream 95637 294550 ~ 294974 (+) True G408166
TU469005 lncRNA upstream 101648 288654 ~ 288963 (+) True G408163
TU468964 lncRNA downstream 45709 441452 ~ 475962 (+) False G408141
TU469078 lncRNA downstream 54795 450538 ~ 461022 (+) True G408216
TU468974 lncRNA downstream 56989 452732 ~ 475962 (+) False G408141
TU468966 lncRNA downstream 80396 476139 ~ 478136 (+) False G408141
TU468968 lncRNA downstream 80396 476139 ~ 478136 (+) True G408141
CI01000300_00380880_00388140.mRNA mRNA upstream 2046 380880 ~ 388565 (+) True CI01000300_00380880_00388140
CI01000300_00373895_00378177.mRNA mRNA upstream 12208 373895 ~ 378403 (+) True CI01000300_00373895_00378177
CI01000300_00324861_00371897.mRNA mRNA upstream 18190 324566 ~ 372421 (+) True CI01000300_00324861_00371897
CI01000300_00313257_00313598.mRNA mRNA upstream 76970 313257 ~ 313641 (+) True CI01000300_00313257_00313598
CI01000300_00226653_00303160.mRNA mRNA upstream 87451 226653 ~ 303160 (+) True CI01000300_00226653_00303160
CI01000300_00422911_00432735.mRNA mRNA downstream 26848 422591 ~ 432772 (+) True CI01000300_00422911_00432735
CI01000300_00486146_00492357.mRNA mRNA downstream 90151 485894 ~ 492836 (+) True CI01000300_00486146_00492357
CI01000300_00509051_00514671.mRNA mRNA downstream 112733 508476 ~ 514751 (+) True CI01000300_00509051_00514671
CI01000300_00685357_00687717.mRNA mRNA downstream 287080 682823 ~ 688434 (+) True CI01000300_00685357_00687717
CI01000300_00695491_00729459.mRNA mRNA downstream 299524 695267 ~ 729746 (+) True CI01000300_00695491_00729459
TU469422 other downstream 580857 976600 ~ 977099 (+) True G408510
TU469410 other downstream 621324 1017067 ~ 1020734 (+) True G408498
TU469837 other downstream 1237287 1633030 ~ 1634969 (+) True G408910
TU469855 other downstream 1354157 1749900 ~ 1759036 (+) False G408928
TU469856 other downstream 1354157 1749900 ~ 1759036 (+) True G408928

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00000189 True 3662 mRNA 0.42 2 NC_007112.7 8534698 ~ 8540050 (+)