RNA id: TCONS_00000201


Basic Information

Item Value
RNA id TCONS_00000201
length 2481
RNA type mRNA
GC content 0.47
exon number 17
gene id XLOC_000108
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9004719 ~ 9064912 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGCAggcgtgtgcgcgcgcgcgtgccCACCAACAGGGAAGCGAAGCGCAAGTCGAGCAGGACCCCGTACACTAGCGCAGTCTACAAGTCGAGGAGATTTCGACCCACTACATCCATTTCTCCCCTATCATGACCGAGTCATCGGATTCAGATGGCAAGGAGGGCGCGCGGGGATTCGCCAGGCAGGGCGCGCTGAGGCAGAAGAACGTGCACGAAGTGAAGGATCACAAGTTCATCGCGCGCTTCTTCAAGCAGCCGACCTTCTGCAGCCACTGCACCGACTTCATCTGGGGTTTCGGCAAACAAGGCTTCCAGTGTCAAGTGTGCTGTTTTGTGGTTCACAAACGCTGCCATGAGTTTGTTCACTTCTCCTGCCCAGGGTCCGACAAGGGCCCTGCATCAGATGACCCTCGCAAATATCATTCGTTCAAGGTACACACATACACCAGTCCCACATTCTGTGACCACTGTGGATCTCTACTGTACGGCCTCATACACCAAGGGATGAGATGTTTGAATTGTCTGATGAATATTCATAAGCGATGCTTTAAGCATGTTCCCAGCCTGTGTGGAACAGACCACACTGAGAAGAGAGGGAGGCTGCATTTCTCTGCTAGTATCACAGGCAATGTTCTCAGTGTGTCCGtcaAGGAGGCTCGTAACTTGGTGCCAATGGATCCAAGCGGCCTGTCAGATCCATACGTGAAGCTCAAATTAATTCCAGACCCAAAGAGCGAGAGCAAGCAGAAGACCAAAACCATAAAGGGCTGCCTCAATCCGGTCTGGAACGAAGACTTCACCTTTGCCCTCAAAGACACGGATAAAGACAGGCGCCTGTATGTGGAGGTGTGGGATTGGGATCGGGGCACCAGGAATGACTACATGGGCTCCATGTCTTTTGGCATCTCTGAGCTGATGAACCAAAGTGTGGACGGATGGTTTAAGATTCTCGCTTGTGAGGAAGGGGTCTTTTTCAACGTTCCTGTTTATGTAGATGAAGAGGAGGGCAACAAGGAGCTGAGTAAGAGATTTGAGAGAGCCAAGATTGGCCCGGGCACTAATAATACAGATGGCGCTTCAAAAAATGACCTCTCCAAATATGATGCCAATGGCAACCAAGACCGCATGAAGCTCGCAGACTTCAACTTCATCATGGTGCTCGGCAAAGGCAGCTTTGGCAAGGTGATGCTTGCGGAGCGTAAAGGTTCAGACGAGCTGTACGCAGTGAAGATCTTGAAGAAGGACGTGGTGATTCAGGATGATGATGTGGAGTGCACCATGGTGGAGAAGAGAGTTCTGGCTTTGTCTGGAAAACCACCGTTCCTCACGCATCTCCACTCCTGCTTTCAGACGATGGACCGTCTTTACTTCGTGATGGAGTATATCAGCGGTGGAGACCTGATGTTTCAGATACAACAAACGGGAAAGTTTAAGGAGCCCCTCGCTGTGTTCTATGCTGGAGAGATTGCCATTGGCCTGTTCTTTCTTCATTCTAAGGGCATTATTTACAGAGATCTGAAGCTGGATAATGTGATGTTGGACTCTGAAGGCCACATTAAGATTGCAGATTTTGGCATGTGCAAAGAGAACATGTTTGATAAAGACACAACAAAAACCTTCTGTGGCACTCCAGATTACATCGCCccagagATCATTGCATATCAGCCGTATGGAAAGTCTGTTGATTGGTGGGCTTATGGAGTTCTCCTGTATGAAATGCTGGCAGGACAGCCTCCTTTTGATGGTGAGGATGAAGATGAGCTGTTCCAGTCCATCATGGAGCATCACGTGTCTTACCCCAAATCCATGTCCAAAGAAGCAGTCGCCATATGCAAGGGGCTGATGACCAAGCATCCCGGTAAACGTCTGGGCTGTGGACTGGAGGGTGAACGGGACATTAAAGAGCATGCTTTCTTCCGTTTCGTGGACTGGGAAAGACTGCAAAACAAGGAAGTTCAACCTCCATACAAACCCAAATCTTGCGGTCGAGACGCAGGGAACTTTGATCTTTTTTTCACTCGTCATCCTCCAATCCTGACCCCTCCTGACCTGGAAGTGATTCAAAACCTGGACCAAGAGGAATTTCGAGGCTTCTCATACGTTAATACAAAATTTGCATCGATGAAATCCAAGTAGCCAGTTTTAGCCAAGCACAATATATATAGGGACCAATGAGATTATAGATACTGAAATGACAGAGTTTGAATGAGCCAATGAGAGTTTGACCTGACTGTTGGAGGAACGGAGGTAATTTCTATATCTATATTGTTCTTCCTTATTATTTCTGGTTTGATTTAAAAAGGATAAAGGGAAGAGATTAAAGGAACTTGTAAATGAACTTACAAAGAGTTAGTGTGTAGCAAGATTTGGACTGTATACTTGTATATCATAGACTGTAGtctaaaaacaacaactaaagtatCTGGGTGACTCTAGTGTCCAAGTCACATTTCACCCAATATTAAAAATAGAGATATAAAAA

Function

GO:

id name namespace
GO:0018105 peptidyl-serine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0006468 protein phosphorylation biological_process
GO:0016310 phosphorylation biological_process
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function
GO:0016301 kinase activity molecular_function
GO:0004697 protein kinase C activity molecular_function
GO:0004698 calcium-dependent protein kinase C activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1354 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in intracellular signal transduction and peptidyl-serine phosphorylation. Predicted to act upstream of or within protein phosphorylation. Predicted to be located in cytoplasm and membrane. Is expressed in several structures, including brain; forebrain neural keel; otic placode; pectoral fin musculature; and pronephros. Human ortholog(s) of this gene implicated in dilated cardiomyopathy and lung non-small cell carcinoma. Orthologous to human PRKCB (protein kinase C beta).

Ensembl:

ensembl_id ENSDART00000006211

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003031 lncRNA upstream 28297 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00003029 lncRNA upstream 38780 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000198 lncRNA upstream 38780 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00003030 lncRNA upstream 38780 8961004 ~ 8965939 (+) True XLOC_000105
TCONS_00000197 lncRNA upstream 305608 8694291 ~ 8699111 (+) True XLOC_000104
TCONS_00003032 lncRNA downstream 64474 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003033 lncRNA downstream 89182 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00000210 lncRNA downstream 92464 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00000214 lncRNA downstream 212934 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000220 lncRNA downstream 822043 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00000199 mRNA upstream 16215 8984068 ~ 8988504 (+) False XLOC_000107
TCONS_00000200 mRNA upstream 16215 8986138 ~ 8988504 (+) True XLOC_000107
TCONS_00000196 mRNA upstream 302035 8694196 ~ 8702684 (+) False XLOC_000104
TCONS_00000195 mRNA upstream 334233 8662530 ~ 8670486 (+) True XLOC_000103
TCONS_00000194 mRNA upstream 394155 8601935 ~ 8610564 (+) True XLOC_000102
TCONS_00000203 mRNA downstream 6412 9071324 ~ 9074479 (+) True XLOC_000109
TCONS_00000204 mRNA downstream 17505 9082417 ~ 9091659 (+) False XLOC_000110
TCONS_00000205 mRNA downstream 22030 9086942 ~ 9091935 (+) True XLOC_000110
TCONS_00000206 mRNA downstream 80046 9144958 ~ 9145896 (+) True XLOC_000112
TCONS_00000207 mRNA downstream 88229 9153141 ~ 9161843 (+) False XLOC_000113
TCONS_00000154 other upstream 1940776 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 2216915 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 2819187 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000123 other upstream 3502635 5497285 ~ 5502084 (+) True XLOC_000062
TCONS_00000121 other upstream 3554275 5438743 ~ 5450444 (+) False XLOC_000062
TCONS_00000208 other downstream 89182 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000209 other downstream 90081 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000213 other downstream 153736 9218648 ~ 9221616 (+) True XLOC_000115
TCONS_00000230 other downstream 986862 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 986872 10051784 ~ 10058057 (+) False XLOC_000126

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00695491_00729459.mRNA True 2518 mRNA 0.48 17 CI01000300 695267 ~ 729746 (+)