RNA id: TCONS_00000211


Basic Information

Item Value
RNA id TCONS_00000211
length 3240
RNA type mRNA
GC content 0.47
exon number 22
gene id XLOC_000114
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 9199031 ~ 9227204 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATGATATTCACAAATTTTTGCGCGAAAGTGTCTGTTGCCGTCTTGTGTGCTCTCGGTCGTTATTGAGTTCATATGTCAAGTTAAAAGAAAATTTCCTGCCAGAGCAGACACTATACCGCAAACATGGACGAATATGACGAAATGTACGGGATTGAGGATGATTTTGAACGACAGTTCGCAGATGAGTTGGAAGTCATGGCTGAATTGGAGAGCAACAATCCACCAGCTGCAAAAGTGTCTGAATTTCGCAATAAGCCGATCACACAGACGTTCGAGGAAGCCCTTGTGTCCGGAGACCAGCCATCAAGGAAATCAGTAAATAACCAGAATCCAGAGAGCATCTCTCCGCCGGTATACGAGGAGGAAGAGGAGTCTCTGACCCCTAAACCCAAGAAAAGGAGGCAAGATGTGGCGAAAAAGCTCCAGTTTGGCGTTGACCAAGATGATGACATCACTCCTCCATCTTCCCCAGAGGTTTACGACAGGGAAGTGAGAGACGGgccTAGATTTTCCCTAACCCTGAGTCCAGACAGACCAGCAGCAACAAAAATAACGACAAATGTTTTAGATATTAGTGGACTGGGAGCTTTACAGGAGTCACCGAAGCAGGTGACGGCAGCAAAACGTCATGCTCAGAAACGCCCACCTGCAATCGGAGATTACATCACAGTCACAGACTCTATGGGAAACAGGGTCTACCTTAACAAGAAAGAGGATGTGGAGAAGACACCAGACCCGAGAGCCTTCCGTAACTCGCTGAATGGACTAGGACTGCTAGCTGTTCCCATTGAAGTGCTCAAGGAACAGATTGCAGAGAGACGGCATCGACAAGTGGTGGAGGAATCTCAAAGACTGACTGAACTTATGAAGAGTGGAATAGATTCAGATCTTCTCGCAGAAGAGCAGACAGACTCGGGTGTGGATGGGGATAGTGGGGAAGATGAAGCATCTTCACGACTTTGGGTGGATCAGTTCTCACCACAGCACTACACTGATCTGCTGAGTGATGATTTTACTAATCGCTGTCTGCTGAAATGGCTGAAGCTCTGGGACACTGTGGTCTTCGGGCGAGAGAGGAAAAGCCGTCCGGTCCCTGTAGAGGCCAGATCAAATTTTACAAACGCTCAAAATCAAAACCAGGCCCAACGTTTCAAAACCAAGTCTCAAATGACAGAAGAGATACTAGAGGCTGAGCTAGACCAGTACAAAAGACCGAAATTTAAGGTAGCGCTATTATCAGGTCCTCCTGGACTGGGGAAAACCACACTAGCACACATTATTGCAAAGCATGCTGGTTACAATGTAGTAGAAATCAATGCTAGTGATGACCGTAGTGCAGAGCTCTTTCAGAAGCGCATTGATACTGCCACACAGATGAAGTCTGTTCTGGGAGCCAATGAAAAGCCCAACTGCCTTATTATAGATGAAATCGACGGAGCTCCTGCTGCTGCCATTAATATCTTATTGGCCACCCTGAACCGGAAGGACAGCAAGGATGGAGAGGAAACAGGAGTCAATgccttgaaaaagaaaaagaaaaagcaatcTGTGCTGCTTAGACCAATCATCTGCATCTGCAATGATCTATATGTTCCAGCTCTAAGGCCACTGAGACAGCAAGCTTTCCTGCTGGTCTTTCCTCAGACTCTGCCATCACGCTTGGCTCAAAGATTAGCAGAgATCAGCAGGCGTCAGGGAATGAAAGCAGATACAGGCACTCTGATGGCCCTGTGTGAGAAAACTGACAATGACATCCGTTCTTGCATCAACACATTACAGTTTTTACACAGTCGTGGACAGAAGCACTTGGACCAGCGCAGTGTCAGCTCCATGTGTGTGGGATTGAAAGACCAAAACAAGGGACTGTTCTCAGTTTGGCAGGAGATCTTTCAGCTTCCTCGACTGAAAAGGAAGCGGATTGGTGGAGATCCTTTCAGTGGTTATGATGAGTTGGGACCTAAAGAGGGTGCACAAAGGCTTCAGCACATCTTACATTTGGTCTCATCTACTGGAGAACATGAGAAACTCACTCAGGGCCTCTATGACAACTTCCTAAGCATGAAGCTGAAGGATCCTGGGATGTTGGGTGTTTGCTCTGGTCTTGACTGGCTGTGTTTCTCAGACTtgctgaatgagtgtgtgttgcaTGGACAGAACTATTCGCTTATGCGCTACTTCCCCTTCCTGCCCGCTGCCTTTCACCAGCTGTACGCCGCCACCTCTGTCCCGCGCATCAATTATCCACACAGCCACTATGAGGCCTTTACCAAAACTCAGCACATCAGGAACGCCCTGCTCGCCATGTTGAACGACATCCCACCTGCCATACAGAGCCGTGTTTGCATGAGCTCTCTCTGTCTGGACATCCTCAGCCTTCTGCTGGAGCTCATCTCCCCCAAACTGAGACCGGTGAACCCTCAGCTTTACAGCACCAGGGAGAAGCAGCAGCTCTATGATCTGATCGACACAATGATCAACTACAACCTGACCTACAGACAGGACCGAACGCCAGAGGGACAGTACACTTATGTGCTGGAGCCTAATATTGAAGATGTGGTGAATTATCCTGGTTTACCTCCTCGGAGACAGTTAACCTATCAGGTGAAGCAGCTCATCGCCAGGGAGACGGAACTGGAGAGGATGAGGAGAGTAGAGAGAGCACAGCAGAGTCGAAACCCACAGAAAATGGAGACCGTAAATAAGAAtcaagaagaaaagaaaacagaagtgaagaAACAGACAAGCAGGAACCATCAACAGAGGCTGGAGAACATCGTAAAACAGACTGTGGTGGAGACCAGGCCCGAATTGGACTTTTTTGGACGAGCCATTGTACCCAAGGAGAAGCCTGTGGTCACTGCTACAAGTGAAGATGGCAAAGTGAGTGGCGTGCTGAACATTGGTAAAGCTGTGGGAAACAGCGACGTCTGGTTTCGTTTTAATGAAGGTGTGTCCAATGCAGTGCGCAGAAACGTTTACATTCGAGAGTTGCTGTAAACTGATCTGGAGAAAGGATGAAGTACATGTCAAATCaatctgtaaaaatctaaaatgttcGGAATAGTTAAACAAAACAGTCATCTAAattgtttgaaaaagaaaaaaaaaacactggttcctcattttctttttattgtgcTGTTGTATAGTTGTCTTACACTTTTATAAATACATGTTTTCACATTTGCTTTCTTTCTTATTATCATGAGAGTAAACAACAAAGCAGATTCACTGACAA

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0003689 DNA clamp loader activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050522-508 Predicted to enable DNA binding activity. Predicted to contribute to DNA clamp loader activity and single-stranded DNA helicase activity. Predicted to be active in nucleus. Is expressed in alar plate midbrain region; eye; immature eye; optic tectum; and pharyngeal arch. Orthologous to human CHTF18 (chromosome transmission fidelity factor 18).

Ensembl:

ensembl_id ENSDART00000092058

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00000210 lncRNA upstream 37556 9157376 ~ 9161475 (+) True XLOC_000113
TCONS_00003033 lncRNA upstream 43510 9154094 ~ 9155521 (+) False XLOC_000113
TCONS_00003032 lncRNA upstream 66541 9129386 ~ 9132490 (+) True XLOC_000111
TCONS_00003031 lncRNA upstream 222609 8967479 ~ 8976422 (+) True XLOC_000106
TCONS_00003029 lncRNA upstream 233092 8950874 ~ 8965939 (+) False XLOC_000105
TCONS_00000214 lncRNA downstream 50642 9277846 ~ 9285351 (+) True XLOC_000116
TCONS_00000220 lncRNA downstream 659751 9886955 ~ 9914630 (+) False XLOC_000120
TCONS_00002811 lncRNA downstream 719460 9946664 ~ 9951873 (+) True XLOC_000121
TCONS_00000233 lncRNA downstream 827204 10054408 ~ 10055303 (+) True XLOC_000126
TCONS_00003034 lncRNA downstream 1234840 10462044 ~ 10462882 (+) True XLOC_000135
TCONS_00000207 mRNA upstream 37188 9153141 ~ 9161843 (+) False XLOC_000113
TCONS_00000206 mRNA upstream 53135 9144958 ~ 9145896 (+) True XLOC_000112
TCONS_00000205 mRNA upstream 107096 9086942 ~ 9091935 (+) True XLOC_000110
TCONS_00000204 mRNA upstream 107372 9082417 ~ 9091659 (+) False XLOC_000110
TCONS_00000203 mRNA upstream 124552 9071324 ~ 9074479 (+) True XLOC_000109
TCONS_00000215 mRNA downstream 62899 9290103 ~ 9294115 (+) True XLOC_000117
TCONS_00000216 mRNA downstream 330008 9557212 ~ 9712302 (+) False XLOC_000118
TCONS_00000217 mRNA downstream 481597 9708801 ~ 9711245 (+) True XLOC_000118
TCONS_00000218 mRNA downstream 633177 9860381 ~ 9866856 (+) True XLOC_000119
TCONS_00000219 mRNA downstream 659787 9886991 ~ 9914239 (+) True XLOC_000120
TCONS_00000209 other upstream 43510 9154993 ~ 9155521 (+) False XLOC_000113
TCONS_00000208 other upstream 43758 9154094 ~ 9155273 (+) False XLOC_000113
TCONS_00000154 other upstream 2135088 7063837 ~ 7063943 (+) True XLOC_000081
TCONS_00000149 other upstream 2411227 6787690 ~ 6787804 (+) True XLOC_000078
TCONS_00000134 other upstream 3013499 6182342 ~ 6185532 (+) False XLOC_000067
TCONS_00000230 other downstream 824570 10051774 ~ 10054771 (+) False XLOC_000126
TCONS_00000231 other downstream 824580 10051784 ~ 10058057 (+) False XLOC_000126
TCONS_00000232 other downstream 826815 10054019 ~ 10057808 (+) False XLOC_000126
TCONS_00000236 other downstream 855274 10082478 ~ 10087525 (+) False XLOC_000127
TCONS_00000245 other downstream 1090873 10318077 ~ 10323272 (+) False XLOC_000132

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000300_00807040_00826385.mRNA True 2779 mRNA 0.47 21 CI01000300 806846 ~ 826435 (+)