RNA id: TCONS_00025506


Basic Information

Item Value
RNA id TCONS_00025506
length 4695
RNA type mRNA
GC content 0.37
exon number 2
gene id XLOC_012780
representative True

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20869923 ~ 20875997 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGGAAGGACTTGGCTCGAACATAGGGATCCACATCAATGAGATTCCTGTCAGTTATGCCAAATGTCAACAAGTCCTCAATGACATCTGGCAAACAATGACTCCAAAGATGGTCATTCATTTAGGCATAGCCCCAGGGGCCAAAGGCATCACATTGGAGCAAACAGGGAAGAACTACTGCTACAAAGACAAGGATGTGAGCGGTCTGTGTCCTGCTGGTCACTGCTGCGTTGAGGGAGGACCAGAACAACTGAACTCCATCATAGACATGAGGTCTCTTGGCAAGCATCTAAAAAGTATGGGGCTCGATGTCATTTACTCCAGGGATGCCGGGAGGTACTGTAACAACTACAGTAACAATTTGAATAATGgataaaatgtattactttaagGTATAGTTAAAAAAGTTTGCTGGCCAaaaaaagaaggttgctggtttgagtctccgctgggtcagttggcatttctgtgtggagtttgtatgttctccctgtgttcgtatgagtttcctccgggtgctccggtttcccccacagtccaaatacatgcggtacaagtgaactgaataaactaaattgactgtagtctatttgtgtgaatgaggttatatggatgttttccagtactgggttgcagctggaagggcatctgctgtgtaaatcatatgctggataagttggcagttcattcccctgtgatgacccctgatgaataaagggactgagccgaaggaaaatgaattattgaatgaatattgacatcatttactctcccttgacttgttccgaatctttatgagtttctttcttctgttgaacacaaaagaagatattttgaagaatgttggaaaccggtaaccattgataCCAATAGTAGGAAAagtaaatactatgaaagtcagtggttactaaTTTTCATCATTCTTTAgtttatcttaatttgtgttcaacaaaagaaacaaagTCAAACAGGTCCAGAacaagtaaatgagtaaatgatggcaggatTGTTATTTTTGTGGTAAACCATTcctttaaatgcattaattaatagcTTAATAgcctgcacattgactgattatTAGTACTTACACAGCACATATTAATGCCTAATTCTGAATGACCATATTCTGCATAAATAAATCCTGTATCCTGTACCCTACACCTAAAactccaaactttttttttgttgaacacaaaagccgatatttaaagggcacctattttaccccttttttaagatttaagataagtcttttgtgtctccagaatgtgtctgtatagtttcagttcaaaacactcatcagattatttattatacctttagaagtttggaattttctgctctgaacactatGTAGCTCTTTTTGCcagtgcctttaatgctagttctcctcaCCCACCATTCActtgtgcctgtcagagtgtggcCCAATCTCCACCtaggctgcgtcagataaacagcacagtgacagacataaatGAAGCAGAtgtcacgtaacgtttgtgagaaatactacagcaagaactttcccaatgattatttgatgtatttgttgtggagttaattcaagcctttctgcgatgatgagtcacacacaacatgcgcacaaacacacagagcGCAGAGTAAATGTGACGGGATACTGTACATgttgctgtatggatatccgttatgttaatgtaaaaaaataaatctaatttaacgtccacaaacgtGTATTCTTTTataatacgcttatttcacacgGCTGTCTTTTTAAAACACGAAAGggaggctgtggtgggaagaaaccctgaagtataggatttgcattgtaaacactgcaacaacatgctgtggactacaaacctccagctatTGCCGCGATTTCAGAgtgcagatatggtgtaaacatcactaaAATATCATTCAGTTGTTTGATTTacacaattaaaagcatattaggcatcaaacaaaatcacaatctCTTCAAGAGTGTCCTCCTTGGCTTCtgttcatggcaccaggtaaacacagTGGGGACCTCCCTGCTTGCTTTAGCATAGGTAACCCGGTGAacgataaaacaatgcagtcctctgtagcacaccctcatgttgtctgtaatagtgttgtcccggtacgggagttttaaaaatgtccatttcccgctaacatttaagtgctgctgagcgcgttcttaaacacaACTGATTTGCCATAGTAGTTACCAGTGCTcatcagaaatgactgtgattggccgtgaaggtcatcagttgaCCGCTCTTcacaagtgcaaacacagatgcaCAAACATTGCAGTGTTTTAAAGCCGCAAAGATCAGTCAagtcatcagcggatcgctcgtctgtgtttgccCTCGGTAAACATCGGTGAACTGTGGTGAACTGATGTCATCCACGGctaatcatttctgttgagcgcCAGTAAACACTATGGCAAATCTGCGTTGTTGCgttcaacagtgcttaaatgttagtgggaaattgaCGGTTTTTATAAATTTCAGTTACGAAATAAAGTATGGTGACAGGTCTAATACAGTGAAGGAATCACTTCATTAACttaagtttgataaatggcatctaaaacgtgtgtttggcaaagaaaacgttagctaactagtatCATTTCctttaacttagctgaaaatgaggtcaaGTATCCCATTTCTTTCCCTTttccattcagaacggaccttcaggACATTCGGAAGGCGATGAAATGatacatttgtgtcactttcagccaggtacacaacatttCTGTGACTCATGtgatacttctgggtttcttcccaccacagcctcgatTTAGCTTTTTTAATGGCGGCTACGTGAAATAAGTCTATTGTACTGAAATGCGGCTGTAAAtcattaaacatgttttaaaaacgttttaaacttgtaaaactcattgttgatcacatttgatgatgactgatgatcacagagagctgaactgatcttttaatcctggttgttttgcgcacgtcctgtcttgttgatatgataatACGTGTTACTATGGAGAAATGTTTATTTAGGGCTGTCAAGCAAattggtgggcagggaaaccgcaCTTCTACGTCATGTTGCGgtgagcctcaaaatgggaggaatttggatcctattttaatgtcaggaaataaaaaaaaaagactttttgtctttatatcaccccgaTATGACTGCCAGCACACAATACCTACACAGTCCTGTCCAAACAGTTCCCAAAAGATTATTTTCatgataggtgccctttaaagaagactgaaaacctgtacccattgtcttccatagtgggaaaaacacttactacggaagtcaatggttattgctttctaacattaaaaaaaaaaaaaaaaaaacttctattgtgcttaacagaagaaagaaaccataaaggtttgaaaaaaaGTAAAGGGTGAGGGGCAACTAttcattaaaaacacttttattaaaatCAATGAATACGTTcccaaaactaaagtgttaccagaaaccAGATGGCCTAGATCATGTGTACGACTATTTCAACTGATCAACAAAGGTTTTTAGAAAAATTATCTCGGTGCAAATACAGTATATATGACTCCAAGAGctcataaaaatgtataaactcctttataaattaataattacatttattaatgttataaaGAATTTTAAACGATAGCATGTTATACAATTATCAACTGAATCGTTTGCAGGTTCCTGTGTGATTTTGTATACTACTATTCATTGTACCATGGGAAGGGAAAGGCTGCATTGATTCATGTACCAGCATCAGGAAGCCTGGCAAGCCCAGAAAGACTGGTACCACAACTCCAGACCATCATCCAGAATCTGTTACAACAGCTGGACAGCCCTGCACACACAACCTGAGGATACATGGACAACACACAGGTAGAAAACACAGAGTAATTGACACAGACTTTCAgactttttttaattcaaaatataagaaataaagtTTTCCCATAATTTATATAATACTTTATTTCATTAATCGTGTGTGCTTGTGGTCTGAACTGTCTTTCATCTAATCCTTTACACCACGGCTGCAGTTTATAATAAAGTTTTGCAGTATAAATGTTAGGAGTTGTATTTCACACTAGCTTTTGTTCTGCTGCTACCATTTTTCAGACTGATCCCTTTTTTTGGTTTGGGGGCTTCCAATGAAACCACCAATAAAGTCTTATGCATATGCGTGACTAGGtgtttgggtaacactttataataactaagcattagcaaatagtgaatttattaactgttaagcattaactacattaatagacatttgTTTATAATTGCAGATATGCATGCTGTAttattgacttataagcacacttataatgtgcttaatgattgtattttcatactttgcttattattattttttaattactaaattaagtattgcatcatttacaaagcagttatttaaaagaaATTGCTGGTTTTTAAGAAGTATCTAGAATGAGTTAGTTCATGATAAActttttaaatcaacatttatacaTCTTGTTATCAAGGCATatatttagttaatttgtttgttaataaatgctttgttaacttCATTCAGTTtagtgacctaatctaaagtgaggactatttatgtttttattattattattatctatttatgCTTTGAAACTATCAAATGATAAAGAAATTCTTGCAT

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0005829 cytosol cellular_component
GO:0016920 pyroglutamyl-peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-171 Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1L (pyroglutamyl-peptidase I like).

Ensembl:

ensembl_id ENSDART00000188274

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00025498 lncRNA upstream 298808 20566846 ~ 20572334 (+) False XLOC_012777
TCONS_00027105 lncRNA upstream 494207 20328119 ~ 20376935 (+) False XLOC_012772
TCONS_00027106 lncRNA upstream 542491 20328125 ~ 20328651 (+) True XLOC_012772
TCONS_00027104 lncRNA upstream 545921 20316443 ~ 20325221 (+) True XLOC_012771
TCONS_00027103 lncRNA upstream 779800 20089658 ~ 20091342 (+) True XLOC_012769
TCONS_00027107 lncRNA downstream 287427 21163424 ~ 21169748 (+) False XLOC_012786
TCONS_00026897 lncRNA downstream 288829 21164826 ~ 21169079 (+) False XLOC_012786
TCONS_00027108 lncRNA downstream 289184 21165181 ~ 21169748 (+) True XLOC_012786
TCONS_00025515 lncRNA downstream 517369 21393366 ~ 21394377 (+) True XLOC_012788
TCONS_00025517 lncRNA downstream 532806 21408803 ~ 21492635 (+) True XLOC_012789
TCONS_00025504 mRNA upstream 17394 20838786 ~ 20853748 (+) True XLOC_012779
TCONS_00025501 mRNA upstream 17766 20825375 ~ 20853376 (+) False XLOC_012779
TCONS_00025503 mRNA upstream 42693 20825418 ~ 20828449 (+) False XLOC_012779
TCONS_00025502 mRNA upstream 43021 20825418 ~ 20828121 (+) False XLOC_012779
TCONS_00025500 mRNA upstream 148332 20677090 ~ 20722810 (+) True XLOC_012778
TCONS_00025508 mRNA downstream 185219 21061216 ~ 21063379 (+) True XLOC_012782
TCONS_00025509 mRNA downstream 195026 21071023 ~ 21076006 (+) True XLOC_012783
TCONS_00025510 mRNA downstream 237219 21113216 ~ 21120218 (+) True XLOC_012784
TCONS_00025511 mRNA downstream 246821 21122818 ~ 21145374 (+) False XLOC_012785
TCONS_00025512 mRNA downstream 246963 21122960 ~ 21143440 (+) True XLOC_012785
TCONS_00025461 other upstream 1747063 19123332 ~ 19124079 (+) True XLOC_012754
TCONS_00025449 other upstream 2042657 18827249 ~ 18828485 (+) True XLOC_012745
TCONS_00025448 other upstream 2071090 18799118 ~ 18800052 (+) True XLOC_012744
TCONS_00025447 other upstream 2100248 18770075 ~ 18770894 (+) True XLOC_012742
TCONS_00025446 other upstream 2136783 18733425 ~ 18734359 (+) False XLOC_012742
TCONS_00025507 other downstream 145702 21021699 ~ 21023601 (+) True XLOC_012781
TCONS_00025513 other downstream 315668 21191665 ~ 21191784 (+) True XLOC_012787
TCONS_00025547 other downstream 2311422 23187419 ~ 23249572 (+) False XLOC_012803
TCONS_00025560 other downstream 2596149 23472146 ~ 23472260 (+) True XLOC_012806
TCONS_00025562 other downstream 3601529 24477526 ~ 24483172 (+) False XLOC_012809

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU91129 True 3135 lncRNA 0.36 1 CI01000013 3708957 ~ 3712091 (+)
eurasian perch (Perca fluviatilis) TU91129 True 241 lncRNA 0.49 2 NC_053117.1 40483677 ~ 40484113 (+)