RNA id: TU91129


Basic Information

Item Value
RNA id TU91129
length 3135
lncRNA type antisense_over
GC content 0.36
exon number 1
gene id G80037
representative True

Chromosome Information

Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3708957 ~ 3712091 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGAATGACATGAGGGTGAGTAATAAATGACATTATTTTCATTTTTGGGTGAACTAACCCTTTAAGCAATGAATGTGTTTTAAAAAAAAAAAAATCTCCCATCTAGCCATGTATATGCTAGCAAAAAAAATATCCTCATATTGAGCAATGAGAGCAAGACTCCATTTATGGTTTTGGTTACAAAAAGGTTGCAGCAGGACAAAAAAAAAGTCACATGAAGTATTATTCATACTTTTTACATTAGAATATTTCAAAAAGTGCAGCTGAGCTGTACAGGATTGGATGTAGAACAGATAAGCCAACAAAAAACATGATTTGAATACGATGCTGTCATTGAAAACTGTACACGATGTTTAAGTTTCCATTCGTTTAAAGGATCTTATTTTTAGTAAAAACTCATTTGCAGCATCAATGGAGATCATGGCCCTGGACTTCCTGTTTCCCAGCATGACCTTCTTAGACACACTGTGCTTTTGCACAACAATGTCAGTCTCCTACATCTGTCAATAGCCTATAACTGAGGATGACTTTAATACACACTGATAACTATACCTGGTTCATTAAGTGAATCTTCCTTCTCTTTTCCTGCAGTCTACTCTAATACCTTTTGGCCAAAGCATCTAATGATTGAATGCATACAACACTTTCTCACAACAAACCAGTGGATTTTTTTCCCCTTCTCATAAACCTACCTGGAAAAAACATTCCAACTGATTTGTTTGGTCAGATGCACTCCACATAGCGAGTACAATATATAAAGGGCCAATTGTCACCGTATTCATCAACATTATTCTCTAGTGGGAGAAAGGGCTGTAGTTTTGCCTCTCTTTTCTACTGCTGCTGACAACATGCTGCTTTACAGAGACTACAAATAGTCTTGCCAATAGCATTGGGTGGGTGGTGGATCTAAGCAACATGCTTTCTCTCTCCAAACAACCGTTAAAAACAGATGGGTCAGACGATTAAATTGCAAAGAGGATTCAGAGAAAGTCATGGTCTTACAACCCCTGGCTGTTCTGTTTCATGGCACTTAAAATATTCTTTGACTTTAGTATTTTGGATCTTTTGAACTCCAGGGGTTGGCTCTTGTAGGAAGAGACCTGAGGAAGAGGCACATTGTTAGAAAAGAATATTCTGTGTGGTACAAGACGATCGAAATAACCATTCTGTAAAAGCCCTTGTGCTTGTATTGTTGCGTATGTATATGGGTGGGAGTGTATCACATGTAGATGTAGTGATTAAGATTTTGATGTGTTTATAATGGGAAAATAATAGATATCACTATTTATTTCTGCTTCTTTTTTTTTCTTTCTGTAATGAATATGGACAAAAGCATTGGCCTGTTGCAAAGTGAATGTCAGTTTTCATTGAATGCTGCCAAGGTTCCTTAGTTACCAGTAGGTTACAGTTCTACAGAAACACACATACACAAATAGGACAGCGATGTCCAGTAGATTACGGGTAGTCATGACACAGAGAGAGAGAGAGAACATGACTAGAATTTAAAATAAAAAGAGACAAGTTTACAGTAGTAATAGCTTATGTTGCAATGAAAGTTTTCTGCAAACCTGAAGGTAGACTGACTGATTTTTTTCCTCAACTATCATGAGAACTATTATTTTATTATATTTCTTCATAATGCAAAACCTCAGGTTTAGAAAAGATGCATGTATGCATTTTAATTGCAATAATGAGCTTGAGGTTTTACAGACATCATTTCCCAGGCACTGTTGTTTCTGCTTGGCATTCCGACAAATTTCAAAAGGGGCCTTGAACTACTGTACTGAAGAGTTTAATAACACTTTATTTTCCTTTCACACAAAAAAAAAAGAAAAGAAAAATGAAAAAAAAAAAAGGAGAAAAATAAAAAAAAAATCTCTGTGTCATTGCATTGATTGGTAGAAACGGTGAAACGGCTTGGCTGGTACTCGTCTTCTTGTAAGTTATGTATCTAAGGCCTCCTGTTTTTCAGTTTTCTCCTCACCTCCAGTTGAGATGGTAGACTTTTTACATGCCATTGGCTTAATGTATATCTGAAGAATTTTCATGTATTTTCTTTTTTTCTTAAATTTTGAATTAAAAAATGAATGAGTCTGAAGACTTGTGTCAAGTGTCACTTATTAAATTTCCACTATGTGATCTACATGATAGGATTATGTTTAATAGAGGACATTTTCTTCAGTGTTTTCTACCTGTGTGCTGTCCATGTACTCTGAGGTTGTGTGTTCAGAGCTGCCCAGCTGGCGTAACAGAGTGTGGATGATGGTCTGGAGTTGTGGTACCAGTCTCTCTGGGCTTGCCAGGCTGCCTGAGGCTGGCACATGGATCAGCACAGCCCTTCCCTGCCCATGGTGCAGTGAATAGTAGTATACAAAATCACACAGGTACCTGCAGGTTGTTAACTTGATGTTAGTAATCATATGCCATTTTATCATTAAAACAATGTTATGAGAAAATTCACAAATGAAGAGAAAAATAAACTTTGTTGAATTTGCAGTACCAACAATTTTATAGGACCTTAAAGGGTTAGTTCAACCAAAAATAAAAATTCTGTCATTAATTACTAACCCTCATGTTGTTCTACACCCGTAAGACCTTCGTTCATCTTCGGAACACAAATTAAGATATTTTTTATTAAATCCGATGGCTCAGCGAGGCCTGCATAGATCCATAAAGGTACTAAAGACATATTTAAAACAGTTCATGTGACTACATTGGTACTACATTGGTTCTACCTTAATATTATAAAGTGATGAGAATACAGATTTTTGGAAAAGTCCATATAATGGAAGTGTACGGGACTTCCGAAGTTGACACTTGAAAAACCACATAAAGCAAACATGACGTTAAGCCATACGACCCCAGTTGAATCGGTGTCATCTGAAGTGAAAAATCTTTGGGTGTTCATCTGCAGAAAGAAAGTCACATTTATATCTGGGACAGCATGAGAGTGAGTAAATAAAAGAATTTTCACTTTTGGGTGGAGTATCCCTTTGAATCAACATATTTTTACAGATAACTTATACAGATAATATATATATATACAGTGGGTACAGAAAGTATTCAGACCCCCTTAAATTTTTCACTCTTTGTTATATTGCAGCCATTTGCTAATATCATTAAGTTCATTTTTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91132 lncRNA upstream 729 3706723 ~ 3708228 (+) True G80040
TU91133 lncRNA upstream 56382 3602363 ~ 3652575 (+) True G80041
TU91151 lncRNA upstream 178110 3530435 ~ 3530847 (+) True G80058
TU91090 lncRNA upstream 296952 3411495 ~ 3412005 (+) True G80003
TU91080 lncRNA upstream 318631 3389945 ~ 3390326 (+) True G79994
TU91161 lncRNA downstream 885 3712976 ~ 3713187 (+) True G80068
TU91162 lncRNA downstream 1206 3713297 ~ 3713517 (+) True G80069
TU91166 lncRNA downstream 20052 3732143 ~ 3740009 (+) True G80072
TU91171 lncRNA downstream 28185 3740276 ~ 3740559 (+) True G80075
TU91177 lncRNA downstream 80576 3792667 ~ 3792881 (+) True G80081
CI01000013_03617490_03705093.mRNA mRNA upstream 3864 3617490 ~ 3705093 (+) True CI01000013_03617490_03705093
CI01000013_03570185_03581155.mRNA mRNA upstream 127228 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
CI01000013_03565240_03566364.mRNA mRNA upstream 142406 3565136 ~ 3566551 (+) True CI01000013_03565240_03566364
CI01000013_03505522_03510594.mRNA mRNA upstream 198240 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
CI01000013_03501267_03503856.mRNA mRNA upstream 204569 3501267 ~ 3504388 (+) True CI01000013_03501267_03503856
CI01000013_03715150_03721616.mRNA mRNA downstream 3059 3715150 ~ 3721731 (+) True CI01000013_03715150_03721616
CI01000013_03744519_03787129.mRNA mRNA downstream 32428 3744519 ~ 3788177 (+) True CI01000013_03744519_03787129
CI01000013_03823326_03839656.mRNA mRNA downstream 111235 3823326 ~ 3839910 (+) True CI01000013_03823326_03839656
CI01000013_03843207_03852634.mRNA mRNA downstream 131116 3843207 ~ 3854025 (+) True CI01000013_03843207_03852634
CI01000013_03856173_03872356.mRNA mRNA downstream 144082 3856173 ~ 3872947 (+) True CI01000013_03856173_03872356
TU91155 other upstream 124173 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1241786 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2755988 946521 ~ 952969 (+) True G77695
TU88411 other upstream 2999408 708833 ~ 709549 (+) True G77533
TU91262 other downstream 352842 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1122987 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2344207 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2366471 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3623854 7335945 ~ 7338239 (+) True G81994

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00025506 True 4695 mRNA 0.37 2 NC_007129.7 20871142 ~ 20875997 (+)
striped catfish (Pangasianodon hypophthalmus) TU117933 True 1857 lncRNA 0.38 2 NC_047600.1 14533820 ~ 14536010 (-)