RNA id: CI01000013_03744519_03787129.mRNA



Basic Information


Item Value
RNA id CI01000013_03744519_03787129.mRNA
length 5887
RNA type mRNA
GC content 0.51
exon number 24
gene id CI01000013_03744519_03787129
representative True

Chromosome Information


Item Value
chromosome id CI01000013
NCBI id null
chromosome length 12551977
location 3744519 ~ 3788177 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGCGTCGGACGGAGCGAAAGGGGAGCAGCCACCTCCGCTACAAACACTGGTAACCACTGGCCATGGAAGCGTCGAGGCGAAATGTGAGCTGAACATCGACAACCTGAGCAAACCAGAGCTCCTGACCCTTCTGAGCATCATGGAGGGAGAACTTGAGGCCAGAGACCTGGTCATTGAAGCTCTTAGGTTCTGCTTCACTCAGCTGCGTCTCATTAATTCGATTGCTACTTTTAATAGACATTTGACAAACGGCACAATGGCATTTACCCTATTTTGCTTGAACAGATGTCATGAGAATAATGTTTCTATCACGTCCTCCGAGTGTGCCCTGGACCCCTCACTCAGCCAGTGCGTGCCTGTAAAGGTTAATGCTAATAATACCAGAGACCTGCCTGAACTCCACCAGGAGTCCTGTGTACACAACTTAAGCTCAACCTGGCAGAAAGTGTATGTGAAGTTTCAACAGGGTTTCTCGTCTTATTTATCCCCTAAAAACCAAGCTCGAAGAAAAGAAGTATTCCTGCAGGAGCGATATGGACAGTTCAGTCTGACGGACCCATTCCTCGCCTTGCAGAGGGACTTTGAGTCAGGAACAGGACCAAAGGACCGTAGGCCTGTTAGCGCGAGCCCCATCACTGTGCTGGAAGCTGTTATGGCCCACTGCCGCAAAATGCAGGAGAGGATGTCTGCCCAGCTCTCAGCTGCTGAGAGCAGACAGAAAAGGCTTGAAATGGAGAAACTGCAGCTGCAGAGCCTGGAGCAGGAACACAGGAAGCTGTCGGCTCAGCTGAAGGATGAGCGAGAGAAAAACAAACACGTGGTGATGTCACTGGTGCATGAATGCAAGCAGCTAGCCGCTCGTGTGGTTGAAGAGAACCAGCGTTTTGAGGAGCTCTCATCCCGTACTGAGCAGGACAGCCGTTCTGTGGGACGACTGGAGGAAGAACTGGCATCTGAGCGACGTCGTAGCCAACAGATGGAAGCGGAGATGGAGAAACAGCTGGCCGAGTTTGACACAGAACGAGAGCAGCTACGTGCCAGGCTTAGCCGCGAGGAGACGCGGGCTGCGGAGCTGCGGGCTGAAAGTGAGAATCTCCGCCAGCAGGTGGAGCAGCTAAAAACTGAGCGATGCAAAGATGCCCCACCACTTCCTTCTGTCACCCCAGCAACTGCCCCAGTTAAACCCAAGACTATGGCATCCGTGGCTGTGGGCACTGAGGCAACCGTCTACAAGACTGCTTCCTCTCAGACAGATGAAAATGAAGCAGCTAAGAAGGTGCCACTCTCCATCCCAGTCAAGCCTACAAGTTCTACCTATGTTAGCATGAACCTACCTAAGACTTCCAGTGCTGGACGGGGGTTACACCACGGGAGCTCTCAGGCAGAAAATGGAGGAGAGGGCCAAACGCATCCACATGGCTCACATTCACCTGGTGTGTCCGCTACCTTGCCGACTGGGGTCAGTCCCCGCGTCCAGGCGGCCCGTTACAAATTCCAACCCTCTGCCTCAGAGCAGGACCAAAATGGAACCGCAAACCAGAGTCCCCCTTCCCGCGACCTGTCCCCCACAAATCGAGATAACTTTGCAGCCAAACAGCAGGCTCGCCACACGGTCACACAGGTTCTCTCCCGCTTCACAAGCCCTCCAGCAGGGGGACCCCCTGCAGCCCTTCGGCCTGGTTTGCCACACTCCACATCTGAGGGGGGACCCTTCGCAGGGCGTTTAGGCCACCCCCAGATAGGCCTTAAATCACCAACTGTGGCCCGCATTGACAGGGGTAACCCACCCCCCATCCCACCAAAAAAACCAGGACTGTCCCAGACACCATCCCCTCCACACCCACCAATCAAAGTAGTAGGTGAAGCCAGCAGGTCCCCAGGAACAGGACTGGGGGTGGGCCTTGCCAAATCAACTGCCACCCCTCAGCTTCCTCCAAAGCCCTCCTTAGATTTGGGCGGTACAGTCCCAGCCTTGACTGCGTCACAGGTGGGTGCTTCCTGTACTGGCTGGCCATGGGGGCAGCAGCCGACAGCAGCATGTGTGGAGTGTCCCCCTGTCACCACCTCCTCCACAGCTACCATTGTCATTAGTCCCTCCATAAACCCACCTAGTCTTCCGTCCCATAGTCCCCAGCACCCGGGCAGCACCCTGGCAGCAGCATCAGGCTGGTGTCCCTCCATAGTCCCCACGCTAACCTGCGGTGACCCCGTCCCCCTGGATGACGGGCAAACCCTTCTCCTCCAAGCTGCTTCCCAGGGAAATGTCACTTTATTGTCTATGCTGCTTAACCAAGATCCACTATTGGATATTCATCATCGTCATCATGAATTAACCTCTGCCTTGATCTCTGCTGCTCTTAATGGACACACAGACTGCTTAAATCTGCTGCTGACTTCAGGGGCATCTGCTGAAGCTGCCGATAAAACAGGATTTACGCCGCTACATGCCGCTGCTGAAAATGGTCACCATGGGTGTGTGAAAGCTCTTGTAAAATGTGGAGCTGATTTGGAGAAGGAGTGTTCGCAGGGAAGGACCCCTCTGTACCTGGCCTGCGAACAGGGACATGTGGAGTGCGTGAAAGTCTTGCTAGATGCAGGAGCAGACCGTTCACATGTCACGACTGACAACTGCACCGCTCTGCACGCTGCAGTCAGTTCAGGTCATGTGGGCCCTCTGAAGCTCCTGCTATACCACCCATCACCTGAACCAGACCTGGGTCTCCCTGCATCTCCTTCAGACTCCAATCAGGAGCTCCAACACCCTGGCATAACCAAAGCCAGTCACATCCTCAACCACAGTAACCAGGATGGCTGGACTGCTGCCCATATTGCTGCATCCAGGGGCTACAAGAAATGCCTGGAGGTCTTGTGTAGCCACAGTCAACAGGACATGGAGAAGAGGGACAAATGCAATCGCACCATACATGATGTTGCCACAGATGACTGCAAAGATCTATTAGAGAACCTGGATTTGTACACAGTAGTTGTACAGGTGCTTATGGGCTCACCGGAGCGTCTTTGCCCTGTGGATCTCCTGGAGGATGGATGCACTGTTGGCAAAGTTACAATTCAGCGCAATATTAGCTGGGAAGAGTTAACAGGAAGCTTGAGTTACCTGCTGACCAATCACCTCCAGCTAATTTGTGGGAGGTGGGAACTGCAGGAAGTTCTGGGTAGAGCGGACACTTTGGGCCTCTCTACTAACAGCATGGCCTCTGTGATTATAGGTGATGCTGTCTGGCTGCCGGGGCAGGAACTGGCCCAGTCTCCTTGGGACCTCATTCGAAAACGCCTGAGTCAACGTATTACCATACATCTTAAAGGCCTGTCAGAGTGCACTCTGGATGAGATGACGTACGACTCCCTGATCCCTCTACAGCTGCTGCAGAACTATGTCCGCCTGGTGGAACAGTACCATAATGTCATCTTCCATGGGCTGGAGGGCAGCTTTCAGGAGTACATCGCCAACCAGATCTCTCATTATATCAAGTACAGACAGGAGGCCCAGGGGATTGGCTGTGATGTCGTCAGGGTGGAGATAGATGAGAGTCTATCAAAAGAGCACCTGCTGGAGATCTTCATCAACTGTGGTTTCCTGGTGTCTTTGCATGAAGGCAGCGCTGGGCGTTGTGTTGTGGCCATTCTTGAGGGTCTGGAGAGAGCTCACTCTCTCAGCCACATCCTGGGAGATCTGTGCGAAGCCCTGGAGAACCGAGGATCTGTCTATTCCCTCTCCCTCAACCATGGTCACAATGGGCTTTACTATTTCCGTGAAGGGAGTTTTTTGATTGGCACTCTGGCTAAGCCTCGCCTGCAGGGTGCTGAGCTACGATTACAGCAGCACTTCCGCTGGGTTCAGCTGCGCTGGGACATCGAGCCCCTTAATGGCATGCTGGGACGTCATCTCCGCAGAAAACTCCTCCACAAGACTCAGGGCCAGTGCTGGACATCTGATGATCCCGTACACAAAGCGCTGTCTTGGGTGTGCTCAGTGTGGCACCAGCTCAATGCCTGTCTGTCGCGTCTGGGGACCTCAGAGGCCTTGTTGGGACCCTATATCTTCCTTTCCTGCCCTGTGAATCCAGAACAGACCCAGGCCATTCCAAAGTGGTTAGTGAGGCTTTGGAATGCAGTGATAGTTCCACGGGTCGAGGACGCTGTTATATCTAGAGTAACAGCCAAGCGCTCTCCCTCCCAACGACGGTCTCCCAACAACAAAGGTCTGAGCCCAGGTCAGAGAGCGGTTGTCAAAGCAGCTCTCAATATTCTTCTGAGTAAGGCTGTGCTGCAAGGCTGCCCACTGTCCAGACCAGAGATTGACAGGCTTTTACCAGAGTTCCAGGGAGGATGTTTCCCTCTTTCCACCATTGGCTCCGCCTACAGGAAAGGTGGCCGAAAAGGACGCGATAATGGCGCTTGGAGACGAGCCAATACCAGTCCACGGAAGAAAGGGAGCCCCGCCTCTGGGAGGAGCTCTAGCTGTTCCTTAAGAGAGGGATCTCTGGCCAATTCAAGCACTCACCCAATGACAAATGTCAATCATGCAAGACTCAGTGACGGAGTTGCTGTGGGTCTGTCTCTCTGCTCTGATGATGAGACAGATCTCATCAGAGAACTCCAGACCATGTGCTCCAGCAAATCTGAGCCAGACATAAGCAAGATTGCTCTCTTTAAAGAGGACTTCATCATGCTTCCAGACTCCAGTCCGCCCACTCCTCAGAGGAGTGACGGTGAGGTCACGCAGCCCCAAACACTCCCTGTTACAACAGAGAGTGCCGTGGATATGACCCATCCTCCACCACAGAAGGCAAGCTTTGATAAAACACCATGGCTCTGATCCAAAGCCTACTGAGACACCTACATAGGTTGCGTAGCATCCTTCTAAGGCATCATCCGAACTGTCACTGAACATTATAAATAACCAATTCGGACGCTCTACATATAGTGCACAGATAAGGGCTTTTCACGCTGCGCTTAAAGGGATAGTTCAGCCAAAAATTAAAATTTGCTGTTAATTTACTCACCCTTTAGGCCATCCAAGATTACTTTTTTTTCTTCAGTAGAACAGTAAAGAAGATTTTTAGCTGAAGCTGTGGTCCTCTGTGATTCAAATAATGGTAGTCAATGAGTGCCGTCACAAAATTAATAGCCATGGCTCCTGACTATACATTGAGGTCTTAAGAAGCGAAACGTGCAAGAAACATTATTAGAGACATTATTCACAATATTTTTACCTCTAATCCACAGCCTTGGCAAACAGTCGTGACACATTCATGGCAGTCTGGAGCAAACTCACACGTGAGCTGATGCTGTGTTTGTTTAAAACAGAGAGGGAAGACGCGCATTTTGTATTGTTTATTAAAATCGTACATCCTTGTGCTTATCCTGGATGCCGCAACCTATATATATAGGAAGATTGACATTTTACAGGTTCCCAACGTTTGAACTCCCGCGAATACGTCATTATGTGACAGGAAACTCGCGCTTCAGACAGTCGTGAATGCGCTCAGGACTGTTTGCCGAGGCTGTGGATTACAGGTAATAATGCTGTAAATAATGTTCAGTTTCTTGTATAGACCGATCATTTCGCTTCTTAAGACCTCAGTGTATCGTCAGGAGCCACGGGTTTTAATTTTGTTTTGTCTGCATATGTTTTTTTGAATTTCAAAGTGACGGCACCTATTGACTTCCATTATATGAATCACCAAGGACCACGGTTTCAGCTAAAAATCTTATTTACTGTTCTACTGAAGAGAAAAAAGTCACCTACATCTTAGATGGCCTGAGAGTGAGTAAATTAACAGCAAATTTTCATTTTTGGGTGAACTAGTCTTTTAACCCCGGGTTATCATCATTCTAAACCCTGCTTTTAACTCAAGGTATGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU91171 lncRNA upstream 3960 3740276 ~ 3740559 (+) True G80075
TU91166 lncRNA upstream 4510 3732143 ~ 3740009 (+) True G80072
TU91162 lncRNA upstream 31002 3713297 ~ 3713517 (+) True G80069
TU91161 lncRNA upstream 31332 3712976 ~ 3713187 (+) True G80068
TU91129 lncRNA upstream 32428 3708957 ~ 3712091 (+) True G80037
TU91177 lncRNA downstream 4490 3792667 ~ 3792881 (+) True G80081
TU91179 lncRNA downstream 4827 3793004 ~ 3793400 (+) True G80083
TU91183 lncRNA downstream 17038 3805215 ~ 3805470 (+) True G80087
TU91184 lncRNA downstream 17877 3806054 ~ 3806715 (+) True G80088
TU91247 lncRNA downstream 138993 3927170 ~ 3927724 (+) True G80143
CI01000013_03715150_03721616.mRNA mRNA upstream 22788 3715150 ~ 3721731 (+) True CI01000013_03715150_03721616
CI01000013_03617490_03705093.mRNA mRNA upstream 39426 3617490 ~ 3705093 (+) True CI01000013_03617490_03705093
CI01000013_03570185_03581155.mRNA mRNA upstream 162790 3570089 ~ 3581729 (+) True CI01000013_03570185_03581155
CI01000013_03565240_03566364.mRNA mRNA upstream 177968 3565136 ~ 3566551 (+) True CI01000013_03565240_03566364
CI01000013_03505522_03510594.mRNA mRNA upstream 233802 3505522 ~ 3510717 (+) True CI01000013_03505522_03510594
CI01000013_03823326_03839656.mRNA mRNA downstream 35149 3823326 ~ 3839910 (+) True CI01000013_03823326_03839656
CI01000013_03843207_03852634.mRNA mRNA downstream 55030 3843207 ~ 3854025 (+) True CI01000013_03843207_03852634
CI01000013_03856173_03872356.mRNA mRNA downstream 67996 3856173 ~ 3872947 (+) True CI01000013_03856173_03872356
CI01000013_03885988_03895027.mRNA mRNA downstream 97811 3885988 ~ 3895027 (+) True CI01000013_03885988_03895027
CI01000013_03902606_03908849.mRNA mRNA downstream 114429 3902606 ~ 3909058 (+) True CI01000013_03902606_03908849
TU91155 other upstream 159735 3584008 ~ 3584784 (+) True G80062
TU90328 other upstream 1277348 2466765 ~ 2467171 (+) True G79309
TU88574 other upstream 2791550 946521 ~ 952969 (+) True G77695
TU88411 other upstream 3034970 708833 ~ 709549 (+) True G77533
TU91262 other downstream 276756 4064933 ~ 4065829 (+) True CI01000013_04051081_04064651
TU92027 other downstream 1046901 4835078 ~ 4836232 (+) True G80845
TU92951 other downstream 2268121 6056662 ~ 6056782 (+) True G81681
TU92936 other downstream 2290385 6079666 ~ 6082367 (+) True G81666
TU93312 other downstream 3547768 7335945 ~ 7338239 (+) True G81994

Expression Profile



Homologous


species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00026466 False 5125 mRNA 0.54 23 NC_007129.7 20726149 ~ 20822045 (-)