RNA id: TU1087


Basic Information

Item Value
RNA id TU1087
length 2487
lncRNA type read_through
GC content 0.48
exon number 3
gene id nme7
representative False

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 1984326 ~ 2101039 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTAAGGTCTTACCCAGATGGACTCCTGACGAGTGTCTGGATGTTCAACATTGATCACTTTTACACCAACAAAACCTCCTATTACACAGGGTACTGCATTGCTTCTGATATTCTAACTTTTTGACCAGCGACTTTGGTATCGGATCCATACATTACACTTTTTCCTGCgggaaaaaaaaaattgtacaacTGCATAAATATAAAACTCTTCCACCATGAAAATGACTTCATTAGACAGTTACACCGTGTCATGTGATGTCTCCAGCAAATTAAAGGGTTGGTTTTAAAAAAACAAAGAGTTGCTGTCAGTGTTTCCATGGAGGAGGAAGGAAGATAGTCTTCCCTGCCTGCTGCAGGACACAGAACACTGCTCTAgactacatagagagaggagaaggagaagcattgaacatagagaggaggaggaggagaagcattgaacatagagaggaggaggagaggcattgaacatagagaggaggaggaggagaagcattgAACATGAGGAGGAGAGGCATTGAAcatagagaggagaaggaggagaagcattgaacagagagaggaggagaagcatTGAACatagggaggaggagaagcattgaacatagagaggaggaggagaagcattgaacatagagaggaggagaagcattgaacagagaggaggagaagcattgaacagagaggaggagaagcattgaacatagagaggaggaggagaagcattgAACATAGAGAAGAGGAGAAGCATTGaacatagagaggaggaggaggagacgatTTGaacatagagaggaggaggagaagcattgaacatagagaggaggaggaggagaagatttGAAcatagagagatgaggaggaggagaagcattgaacagagagaggaggagaagcattgaacagagagaggaggagaagcattgaacatagagagaggaggagaagcattgaacatagagaggaggaggaggaggagaagcattgaacatagagaggaggaggagaagaagcatTGAACATAGGGAGGAGAAGCATTGAAcatagagaggagaaggaggagaagcaTTGAAcatagagaggagaaggaggagaagcattgaacagagaggaggaggagaagcattgaacagagagagatgaggaggaggagaagcattgaacagagagaggaggagaagcattgaacagagagaggaggagaagcattgaacatagagaggaggaggagaagcattgAAAATagagcgaggaggaggagaagcattgaacatagagaggaggaggaggagaagcattgaacagagaggaggaggagaagcattgAACATAGagatgaggaggatgagaagcattgaacagagagaggaggagaagcattgaacatagagaggaggaggagaagcattgaacagagagagaggaggagaagcattgaacatagagagaggaggaggaggaggaggagaagcattgaacagagagagaggaggagaagcattgaacatagagaggaggaggaggagcattGAACATAGAGAGGAGGATCAAACAAGACATTTCATTAAACCCTCTGTCCCATATTAAAGTTGATGCTAAAAGAAAAATAGTAATGTAGAAATATTGTCCCACAATCAACTCAAAAAGACACAGGAAAAGCATTCCGGGGAGTGCATCCGTTTACTGACAGACTTGGAGATCAGAGCGTACCATGCCAGCATTTTCAGTTAGTAAGAGCACATTAACACATATCCACACACTCACattaaaacacaaacacaccttggACCACTAAAGCTTACTGACATAAGACAACAGAAATTACAACATGGCTTGGAAAGGACCACTGTATGCCACTACTGTACTGGACACTCCAAACATATATAGAAACCACATTAGGCAGAATACTTAGgaggacagacagaaacactGCTCGCTACATATCAGTAGTGGAATTGCAATTTACAGTAAGAGATGAACATGTCCCATGGCTCAGGGACTTCTCATTTACAGTAGAATAAATATGTTGCTATTGCTACTCTTCCTGTAAAGTACATTCTAACCCTAGACATTATGCAGAAAAGCCAGTGTAGTGTACACAGATTGACTCTAGGTCCCGTATATTATGAAAGTTTGTTCCAAGACTAGTCGTGTttttaatataacttttttttttcttctaaatcaTCTTGTTTTGAAATGTGGGAAGATAACAGTGTGTTTTTCTGAGGTCATAAATTGCTGATGGTGAACTTAACGTCAAATCGTCCTTGGTAGCGATCTTTCTCGCTGTAGTCAATGTTCGCTCCATACACTTTGCACTCAAGACGCAGCTCCTCGTTGAAGGTGAGGTTGGTAAACTGGATGGCCACCAGAGGCTGTAGGTAGTTGGGGTGCAGCAGCTTGCCATAGTAGGGGTAGTACTGGAGGGGGAACCCCATGCCCATGCCATAGTACTTGATCTCACCAATCTTGCTagcatcctcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1096 lncRNA upstream 21199 2076716 ~ 2077288 (+) True G864
TU1191 lncRNA upstream 34802 2063179 ~ 2063685 (+) True G952
TU1190 lncRNA upstream 47856 2050359 ~ 2050631 (+) True G951
TU1187 lncRNA upstream 54777 2043353 ~ 2043710 (+) True G948
TU1185 lncRNA upstream 61932 2035856 ~ 2036555 (+) True G946
TU1078 lncRNA downstream 17872 2118911 ~ 2130795 (+) True G853
TU1218 lncRNA downstream 18852 2119891 ~ 2121267 (+) False G971
TU1219 lncRNA downstream 18852 2119891 ~ 2122724 (+) True G971
TU1221 lncRNA downstream 22506 2123545 ~ 2125928 (+) False G973
TU1222 lncRNA downstream 22506 2123545 ~ 2125928 (+) True G973
NM_001160554.1 mRNA upstream 26 1984574 ~ 2098461 (+) False nme7
XM_036979332.1 mRNA upstream 130911 1859378 ~ 1967576 (+) False tmem131
XM_036979391.1 mRNA upstream 130911 1859378 ~ 1967576 (+) False tmem131
XM_036979429.1 mRNA upstream 130911 1859414 ~ 1967576 (+) True tmem131
XR_005052028.1 mRNA upstream 132197 1859377 ~ 1966290 (+) False tmem131
XM_036979903.1 mRNA downstream 75633 2176672 ~ 2192895 (+) True dpt
XM_036980048.1 mRNA downstream 111096 2212135 ~ 2258325 (+) False zbtb11
XM_036980129.1 mRNA downstream 111096 2212135 ~ 2258325 (+) False zbtb11
XM_036979967.1 mRNA downstream 111097 2212136 ~ 2258325 (+) False zbtb11
XR_005052082.1 mRNA downstream 111097 2212136 ~ 2258325 (+) False zbtb11
TU1201 other upstream 18884 2078898 ~ 2079603 (+) False G961
TU1202 other upstream 18884 2078898 ~ 2079603 (+) False G961
TU1203 other upstream 18884 2078898 ~ 2079603 (+) True G961
TU710 other upstream 1088280 1003783 ~ 1010207 (+) False G583
TU707 other upstream 1089334 1003783 ~ 1009153 (+) False G583
TU1265 other downstream 157844 2258883 ~ 2263565 (+) False G998
TU1266 other downstream 157844 2258883 ~ 2263565 (+) False G998
TU2640 other downstream 543296 2644335 ~ 2645169 (+) True G2016
TU3048 other downstream 1113658 3214697 ~ 3216234 (+) True G2343
TU3203 other downstream 1402230 3503269 ~ 3503581 (+) True G2464

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00062737 False 2267 mRNA 0.42 6 NC_007117.7 29217392 ~ 29227487 (+)
bowfin (Amia calva) AMCG00014325 True 1874 mRNA 0.44 6 CM030128.1 9216869 ~ 9228627 (-)