RNA id: XM_021616911.2


Basic Information

Item Value
RNA id XM_021616911.2
length 3570
RNA type mRNA
GC content 0.49
exon number 3
gene id LOC110532767
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82182893 ~ 82187206 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACGACGCTGAAGAGCGAATTCGGATCTGTTCCGAGATCATCGGAGAGCCTTTTTGATTTATCAAACCCATTTACCGAGGTTTTGACAAAAATGAATGAGAAAGAACTGCTCCATGGGCTGAACGACCGTTTCGCCCGATTCATAGAGAAGGTGCGTCATTTGGAGCATGAAAATGAATTGTTTGAGAGGGAAATCGAGGAAATCAAACTAAAGGCACAGTCCCCTGCGTCTCTGGCCCAGGAGCACGAGCCGGAGCTTATGGACCTGAGGAACCTAGTTCATGACATCACCCTTCAGAAGCGTCAGATCGAGATAGAGCATCAGAACCTGGAGGAAGATTTCCTCACCTTGAGAGACAAGTATGAGCAGGAGGCACGTGACCGCTCGAACGCAGAGAACGGCATCCTTGTGCTGAAAAAGGACGCCAACGATGCATACCTCGCCAAACTTCAGTTGGACAAGAAAGCGCAATCTCTGGTGGACGAGATCCACTTCCTGAAGAAGAACCATGAGGACGAGGTATCAGAAATGGTGGCCCAGTTCCAAGAGGCTCAAGTAACGGTCAAGGCGTACAAGTTTGGCAAACCTGACATCACAGAGGCTCTCCGGGACATCCGTGTGCAGTTAGAAGGTCACGCCACCTCCGACTTTCAGCAAGCCGAGGAGGGCTTCCGTGTCCAGTTCGCAAAGTTAACCAAAGCGGCAGAAAGTAACAGAGAGGCGTTGAAGGCAACCCAGCAGGAGATCCAGGAGAATAGAAGGCACCTGCAGGGGAAGACAATTGAACTGGACTGTGGTAAAGGAATGAGAGAGGCCCTGGAAAAACAACTATACGAGCTGGAGAAGCGTCACTATGCGGAAATGATTCATTACCAGGACACTATCAGGCAGCTGGAGAATGAGCTGACCAATGCTAAACTAGACATGTCTGGCTACCTGAGAGAGAACCAGGACCTGCTGAATGTCAAAATGGCTTTGGATGTGGAGATTCTCTCTTACAGGAAACTCCTGGAGGGTGAGGAGTCCCATCTGTACACCATCTCTGACACCCACATCTCCATGCCCTGCATCTACCGCCAGTCCCCCGTCTACACCCTGCCTTGCCTGGCCCGGCAGGGAGGGCCCACACGCAGGTCTGAACCCCAGTACAAGTTTGTTGAGGAGATCATCTCTGAGACCACCAGAGACATGGAGATGTCCGAGATTGAGGAGACAGGCTCCGAGGAGACGgtcgggggagagggagacaagttgAGACAGAAGCAGGGAGAAGAGAGTGACAAAGCTGAGAGGAGAAGTGGGGAACAGGTGGATGAGCAGAAAGAGAAAGCTAGAGGTAAAGTGGATGTTGAAGTGGACGCCCCGGAGGAAGAGGGTGAACAGGAGGAAGAGTCTAAGAGACAGCAGATGGTCACATCAGCAGAGGTCGAGGTAAATGGAGATGGAGTTAGCCCTAGTGAGGGAGaaaatggagaggagggagatgatgaaagagaggaggaaaaggggggtgAGCCAGATGCAATCAAAAAGACAGAGGACATTGACAGAGGTGAAAATACACAAAGTGAAGTCAAATCAGCTGAGGCCAccagtgagggagagaaggaaaaacTGGACACAACAGAGAAGCTAGACAGCGAGATAAACGAGACATTAGAAAAAGATGACACCCCAAAACAAGGCAAATCCCAACTAGAGGTTCCCATGAATGGTGACATCTCAACAGAACCCAAAACGTCAGAGTCAGAGGATAGCAAAACAGGAAGTTCAATAAAGGGTGAACCACAGGTCCCCACAGAGAACATCTCCAAAGAACCCAAAAAGGTGTCAgaggagagaaaaatagaaaggCCTTTACAAGAGAAAAAAGAGGTAGATCTGAAAGAGGAGAGTGCCCCAACAGAGCAACAACAAGATAGCCCAAAAGAAAGTCCCATCAAAGAGGGAAAAAAGGTAGATCTGACAGACCAGAGTGCCCCAACACTGGAGCAGAAACCTGATCAGGAGCACAGAGAGTCAGACCAACCTCAAGAGGCAGAGAGTGCTGTGACAACACAAGAAGAGGATCTCCCTGAGCCCACAGAGAAGGACATGGAATCCTCTGATAACACTGCAGAGCTCAACACCAGTTCAACCAAGGAGACAGTGGAGCAGGTGAAGTCACCTGATGATTCTGGTGTAAAAACGACACAAGATGAGAGAACAGTAGGAGGTAAAATGCCAGACAGAATTCTCAGCACAACAAGTGAGTGTAAGGAAGAGCCTTTGCAAAAGACTCCTAAAAAGGAGGTGGGTCCGACAGAGCAAAAAGTGAGCAGCAAGGATGATAGTGTAAAAAGTTTTGTGCAGAAGGAACATAATGGCAGAGAAAAGGTCACAAAAGATGTCTCAATGAGTGAGGACAAGGGGAAAGAATCGGAGACATCCCCTAAACCCAACCCCACTGTGACTCCTAAAGAAGAAACAAGCCTGTATTCAGAGCCAACTGTCACCCCTAAAGAAGAAACTTCCATTAAACCAGAACCAGCAGTCACTGCAAAAGAAGAAACGTCCCCAAAACCAGAACTAGCAGTCACCACTAAAGAAGAAACTTCCCCAAAAACAGAACCAGCAGTCACCACTAAAGAAGAAACGTCCCCAAAACCAGAACTAGCATTCACCACTAAAGAGGTGACATCCCCTAAACCGGAACCCACTGTCACCCCTAAAGACGAAACATCCCCAAAACCGGACCAAACTGTCACCCCTAAAGAGGAGTCATCCCCACAACAGGAGCCAACCGTAACCCCTAAAGAAGAAACATCCCCTAAACCGGACGCCACTGTCGCCCCTAAAGAAGAAACAGCCCCGCAACCAGAGCCAACTGTCACCCTTAAAGAGGAGACATCCCCACAACAGGAGCCAACTGTCACCCTTAAAGAGGAGACATCTCCTAAACCGTACCCTACTGTCACCCCTAAAGAGGAGACATCCCCACAACAGGAGCCAGTTGTCACACCTAAAGTAGAAAATTCCCGCAAACCAGAACCAGCAGTCACCCCTAAAGAAGAAACTTCCCCAAAACCAGAACCAGCATTCACCCTTAAATTAGAAACTTCCCCACCACCAGAACTAGCTGTCACCGCTAAAGAAGAAACTGCCCCAAAACTAGAACTAGCAGTCACCACTATAGAGGAAACTTCCCCAAAACCAGAACCAGCAGTCGCCCCTAAAGTACAAACTTCCCCAAAACCAGACCCAACCATCACCCCCAAACAGGAAATATCCCCTAATTCAGACCCAACCCTCACCCCAGAATCAATGACCACCCCTAAACCAGACTCAACCCTCACCCCAGAATCATCGACCAGCCCTACAGAAGAGAGTGAAACGATGGGCAGTGGTGACAAAGCTAAGACAATCACACCACCAGAGGAACAGATGCCTGCAGTTGTAGAGAGCAAGGACTCACACAGGGGGGTGCCAGAAAGCAACACAACTCAGGAGAAACCAGAGGAAAGTATGGACAAAGAGCCTGAGAAGGTTACAGAACCCAAAGACAGAGAGCGTGAAGACCAAGGCCTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU102056 lncRNA downstream 2741 82179295 ~ 82180152 (-) True G92636
TU102048 lncRNA downstream 3679 82177868 ~ 82179214 (-) True G92629
TU102049 lncRNA downstream 3822 82172016 ~ 82179071 (-) False G92629
TU102041 lncRNA downstream 18780 82163894 ~ 82164113 (-) True G92622
TU101968 lncRNA downstream 21150 82160407 ~ 82161743 (-) False G92566
TU102057 lncRNA upstream 1094 82188300 ~ 82189565 (-) True G92637
TU102051 lncRNA upstream 13210 82200416 ~ 82223759 (-) True G92631
TU102050 lncRNA upstream 15649 82202855 ~ 82203272 (-) True G92630
TU102053 lncRNA upstream 59644 82246850 ~ 82291520 (-) True G92633
TU102052 lncRNA upstream 83449 82270655 ~ 82271334 (-) True G92632
XM_021613778.2 mRNA downstream 26335 82150127 ~ 82156558 (-) True LOC110530583
XM_036989917.1 mRNA downstream 277234 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 457127 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 457127 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 553167 81607478 ~ 81629726 (-) False LOC110530475
XM_021613824.2 mRNA upstream 3712 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 23296 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 45374 82232580 ~ 82245632 (-) True LOC118966722
XM_036989946.1 mRNA upstream 70840 82258046 ~ 82266018 (-) True LOC110532773
XM_036989948.1 mRNA upstream 87863 82275069 ~ 82288547 (-) True LOC110530601
TU101970 other downstream 21150 82160407 ~ 82161743 (-) False G92566
TU101980 other downstream 21150 82160407 ~ 82161743 (-) True G92566
TU101510 other downstream 565569 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 1001430 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1146755 81035575 ~ 81036138 (-) True G91947
TU102078 other upstream 106607 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 108106 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 762408 82949614 ~ 82961322 (-) False LOC100301648
TU103475 other upstream 762408 82949614 ~ 82961322 (-) False LOC100301648
TU103482 other upstream 762408 82949614 ~ 82961322 (-) True LOC100301648

Expression Profile