RNA id: TU4335


Basic Information

Item Value
RNA id TU4335
length 471
lncRNA type intronic
GC content 0.46
exon number 3
gene id G3354
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 4444881 ~ 4453583 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tagtagcagtagtagtagcagtagtagtagcagtagtagtagtagtagcagtagtagtagcagtagtagtagtagtagtatcagcagtagtagcagcagtagtagcagtagtagtagtagtagcagcagtagtagtagcagtagcagcagtagcagtagtagcagcagtagtagtagtagtagcagtagtagtagtagtagtagcagtagtagtagtagtagtagtagtagcagtagtagtagtagtatcagcagtagtagcagcagtagtagcagcagtagtagtagtagtagcagtagtagtagtagtagtagcagcagtagcagcagtagtagtagcagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagtagcagtagtagtagtagtatcagcagtagtagcagcagtagtagcagcagtagtagtagtagtagcagtagtagtagtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU4190 lncRNA upstream 9397 4357439 ~ 4435484 (+) True G3232
TU4166 lncRNA upstream 154022 4289767 ~ 4290859 (+) True G3211
TU4160 lncRNA upstream 162465 4281407 ~ 4282416 (+) True G3205
TU4159 lncRNA upstream 165250 4279406 ~ 4279631 (+) True G3204
TU4157 lncRNA upstream 167441 4277168 ~ 4277440 (+) True G3202
TU4364 lncRNA downstream 29140 4482723 ~ 4489920 (+) False G3375
TU4368 lncRNA downstream 29140 4482723 ~ 4487440 (+) True G3375
TU4372 lncRNA downstream 36409 4489992 ~ 4498191 (+) True G3377
TU4418 lncRNA downstream 135073 4588656 ~ 4626800 (+) True G3416
TU4419 lncRNA downstream 139102 4592685 ~ 4593589 (+) True G3417
XM_021616297.2 mRNA upstream 591872 3848517 ~ 3853009 (+) True im:7152348
trnap-ugg mRNA upstream 596922 3847888 ~ 3847959 (+) True trnap-ugg
trnap-cgg mRNA upstream 597187 3847623 ~ 3847694 (+) True trnap-cgg
XR_005052490.1 mRNA upstream 619016 3823136 ~ 3825865 (+) False LOC118965227
XM_036981292.1 mRNA upstream 820299 3602663 ~ 3624582 (+) True bcl6aa
XM_036983882.1 mRNA downstream 495144 4948727 ~ 4957086 (+) False agxta
XM_036983911.1 mRNA downstream 495808 4949391 ~ 4957086 (+) True agxta
XM_036984367.1 mRNA downstream 1210588 5664171 ~ 5767693 (+) False LOC110526525
XM_036984422.1 mRNA downstream 1210588 5664171 ~ 5767693 (+) False LOC110526525
XM_036984452.1 mRNA downstream 1210588 5664171 ~ 5767693 (+) False LOC110526525
TU4331 other upstream 2973 4439966 ~ 4441908 (+) True G3351
TU4195 other upstream 45437 4398904 ~ 4399444 (+) True G3234
TU4120 other upstream 266808 4175323 ~ 4178073 (+) True G3176
TU3203 other upstream 941300 3503269 ~ 3503581 (+) True G2464
TU3048 other upstream 1228647 3214697 ~ 3216234 (+) True G2343
TU4683 other downstream 400938 4854521 ~ 4856248 (+) True G3596
TU4684 other downstream 402942 4856525 ~ 4857065 (+) True G3597
TU6645 other downstream 2063899 6517482 ~ 6518189 (+) True G5276
TU6993 other downstream 2357411 6810994 ~ 6811621 (+) True G5581
TU7952 other downstream 3271463 7725046 ~ 7725609 (+) True G6434

Expression Profile