RNA id: TU101810


Basic Information

Item Value
RNA id TU101810
length 254
lncRNA type inter_gene
GC content 0.40
exon number 1
gene id G92449
representative True

Chromosome Information

Item Value
chromosome id NC_048565.1
NCBI id CM023219.2
chromosome length 95772356
location 82064615 ~ 82064868 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgtgaaatgtcagaataatcgtagagagaatgatttatttcagctttccacattcccagtgggtcagaagtttacatacactcaattagtatttggtagcattgcctttaaattgtttaacttaagtcaaacgtttcgggtagccttccacaagcttcctacaataagttgggtgaattttgacccattcctccttacagagctgATATAACTGAGGCAGgttcgtaggcctccttgctcgcacatggtttttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU101781 lncRNA downstream 36487 82027901 ~ 82028128 (-) True G92421
TU101754 lncRNA downstream 56721 82005118 ~ 82007894 (-) True G92394
TU101752 lncRNA downstream 62506 82001689 ~ 82002109 (-) True G92393
TU101743 lncRNA downstream 71972 81992431 ~ 81992643 (-) True G92384
TU101737 lncRNA downstream 79542 81984867 ~ 81985073 (-) True G92378
TU101812 lncRNA upstream 666 82065534 ~ 82065758 (-) True G92451
TU101835 lncRNA upstream 20291 82085159 ~ 82085457 (-) True G92474
TU101930 lncRNA upstream 27562 82092430 ~ 82092660 (-) True G92533
TU101944 lncRNA upstream 49125 82113993 ~ 82114245 (-) True G92547
TU101968 lncRNA upstream 95539 82160407 ~ 82161743 (-) False G92566
XM_036989917.1 mRNA downstream 158956 81863824 ~ 81905659 (-) True LOC110530522
XM_036986874.1 mRNA downstream 338849 81648412 ~ 81725766 (-) False LOC110530466
XM_036986871.1 mRNA downstream 338849 81648413 ~ 81725766 (-) True LOC110530466
XM_021613577.2 mRNA downstream 434889 81607478 ~ 81629726 (-) False LOC110530475
XM_036986856.1 mRNA downstream 507237 81545225 ~ 81557378 (-) True qrfpra
XM_021613778.2 mRNA upstream 85259 82150127 ~ 82156558 (-) True LOC110530583
XM_021616911.2 mRNA upstream 118025 82182893 ~ 82187206 (-) True LOC110532767
XM_021613824.2 mRNA upstream 126050 82190918 ~ 82198422 (-) True LOC110530609
XM_036989927.1 mRNA upstream 145634 82210502 ~ 82218883 (-) True LOC118966721
XM_036989935.1 mRNA upstream 167712 82232580 ~ 82245632 (-) True LOC118966722
TU101510 other downstream 447291 81607478 ~ 81617324 (-) True LOC110530475
TU101313 other downstream 883152 81180824 ~ 81181463 (-) False LOC110532756
TU101255 other downstream 1028477 81035575 ~ 81036138 (-) True G91947
TU101251 other downstream 1033257 81030832 ~ 81031358 (-) True G91943
TU101249 other downstream 1036003 81027908 ~ 81028612 (-) True G91941
TU101970 other upstream 95539 82160407 ~ 82161743 (-) False G92566
TU101980 other upstream 95539 82160407 ~ 82161743 (-) True G92566
TU102078 other upstream 228945 82293813 ~ 82294303 (-) False LOC110532782
TU102047 other upstream 230444 82295312 ~ 82301847 (-) True LOC110532782
TU103453 other upstream 884746 82949614 ~ 82961322 (-) False LOC100301648

Expression Profile