RNA id: XM_039792758.1


Basic Information

Item Value
RNA id XM_039792758.1
length 1310
RNA type mRNA
GC content 0.54
exon number 2
gene id LOC120554130
representative True

Chromosome Information

Item Value
chromosome id NC_053135.1
NCBI id CM020932.1
chromosome length 21835524
location 11104367 ~ 11105832 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTCCAACTCTGTGAGGCTACAGCACCATCTAGAGGTGAATTCAGGCAACTTCCTGTTTTAAAGACagatccaacatggctgccccctTGTAGACGTTTTAAGGCGAGCTGCTTGTGTGAAGTAACTGCAAACCATGAGGGATTTTCAGcCACCATGGATGCAAAAGAAATAGTCCACTGTGCTGTGCAGATAGAGCGATCCCTTGCAGAGAGAAGCTACGGGAACATCTTGACCCTCCTTGGTGACGTTGATAAGTTGCACGTCACAGCAGAGCAGCTGGAAACGACGGACATTGTTAGAGTACTCTACAGGCTCCTGAAGAGCTGCTCTGACGTCAGCGTGAAGAAGACCGCGAAGAGCCTGCTGTCCAAGTGGAAGAGGGAGTACGGCAAAGACACACGTGGTGTGAAATGCACGGGGGATGCTGAGCTCTCTCGCAGGGCTCCTCTACCAGATGATGAGGCAGGCGATGGAGGAGTTTCCGAGCACGGGGATTCCCACGCTGGTTCTGCACACGCATGTGGCAGTCAGGTGAAGTGTGCAGAGCAGGGAGCCTCATCCCCCGAGGCACACGATGGCCTTTCTTTCACTGCAGAGAGCACATCCGCATCCCGTAGTTTCTCACCTGTACGATCTAAATGTGTTCAGCTCCTTCTTGCTGCCCTCTGCCCCGAACTCCCTGATCAAGACAAGGCTGCAGAGCTCGCTGCAGATATCGAGCAGCACGTCCACGAGCTCCACAAACCCAGCCAGGGCAAATACAAAGCCTGCGTGAGGAGCAAGGTGGCCAACTTGAGAAATCCTAAAAACGGGCACCTACGCCAGGGCCTCCTGAGCGGCTCGCTGTCACCCGAGGCCTTCGCCCGGATGTCTCCAGAGGAGATGGCCGGCGCAGAGCTCCGGAAGCTGAGAGAGGAGTACTCGTCTCGTGGTGTGAGCGAAAGGCAGCTTCCTCGAGGGATAGAAGGAACGCAGACGCAGAAGATAAGATGCAAGCGATGCGGGGGGTCAGACTGTCGGGTGACGCAGGTGTCCAGGGGCGCCCTCTTCTTGCCTGCGTGGGTGAGGCAGAGCGGCCCTGATGAAGACGCAATGACTTTTGTGACCTGCAGCGAGTGTGGGCAGCAGTGGTACCACAGCAGCTGGGTCTGCCTCTGATTAACAAGTATCAGATTGATCATTCAGTATCTATCACAGTAAATCAATCCGCAACAATtttgaatatacagtacaggccaaaagtttggacacaccttctcattcaatgtgttcctttattttcatgactatttacattgtagattctcact

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU317807 lncRNA downstream 10185 11041186 ~ 11094182 (-) True G234024
TU317809 lncRNA downstream 21199 11060811 ~ 11083168 (-) True G234026
XR_005638321.1 lncRNA downstream 57431 11037355 ~ 11046936 (-) True LOC120554127
XR_005638320.1 lncRNA downstream 57431 11039109 ~ 11046936 (-) False LOC120554127
XR_005638318.1 lncRNA downstream 146077 10957910 ~ 10958290 (-) True LOC120554121
TU317810 lncRNA upstream 30795 11136627 ~ 11139188 (-) True LOC120554131
TU317815 lncRNA upstream 46010 11151842 ~ 11152551 (-) True G234032
TU317841 lncRNA upstream 178960 11284792 ~ 11285090 (-) True G234051
TU317856 lncRNA upstream 199779 11305611 ~ 11306703 (-) True G234063
TU317874 lncRNA upstream 226449 11332281 ~ 11332560 (-) True G234078
XM_039792756.1 mRNA downstream 3214 11095516 ~ 11101153 (-) False LOC120554129
XM_039792757.1 mRNA downstream 3824 11095516 ~ 11100543 (-) True LOC120554129
XM_039792744.1 mRNA downstream 75006 11020833 ~ 11029361 (-) True LOC120554122
XM_039792746.1 mRNA downstream 85705 11013995 ~ 11018662 (-) True LOC120554124
XM_039792747.1 mRNA downstream 85705 11014355 ~ 11018662 (-) False LOC120554124
XM_039792759.1 mRNA upstream 30880 11136712 ~ 11139245 (-) False LOC120554131
XM_039792761.1 mRNA upstream 34705 11140537 ~ 11150651 (-) True LOC120554132
XM_039792766.1 mRNA upstream 49094 11154926 ~ 11220986 (-) False LOC120554133
XM_039792765.1 mRNA upstream 49094 11154926 ~ 11220986 (-) False LOC120554133
XM_039792762.1 mRNA upstream 49094 11154926 ~ 11220986 (-) False LOC120554133
TU317805 other downstream 57408 11040007 ~ 11046959 (-) False LOC120554127
TU317684 other downstream 135257 10967423 ~ 10969110 (-) True G233954
TU317688 other downstream 145735 10948468 ~ 10958632 (-) False G233954
XR_005638322.1 other upstream 284172 11390004 ~ 11441926 (-) False spega
TU318109 other upstream 1182088 12287920 ~ 12293143 (-) False G234253
TU318311 other upstream 1847258 12953090 ~ 12954125 (-) True G234405
unassigned_transcript_1566 other upstream 1879985 12985817 ~ 12985888 (-) True trnae-uuc_66
unassigned_transcript_1567 other upstream 1950784 13056616 ~ 13056687 (-) True trnad-guc_30

Expression Profile