RNA id: XM_034306353.1


Basic Information

Item Value
RNA id XM_034306353.1
length 3020
RNA type mRNA
GC content 0.41
exon number 13
gene id porcn
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11705547 ~ 11714032 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGAgtctgttctgattggttcagTGATGAAGAGCTCTGAAGCTGATTGGATGTTGGGTTTCTGAGATTAGGTGATGGTCTGCAGCTCATCCTCAGCTGAGGGCATCAATGGAAATCAGGATAATAGCATCAGGACCAGACGTGTTGACTGGATAATTTACTAAACTAACCGAAACAGGACTGGAATTTCTCCATCACTTCGTCAAACCAAACTGAGCGACAAATCTGGCAGCTGAAGGACGGCCATGAGGGCTCTCAGCCGGCAGCAATTCTTTCAGGAGCTTCCTTTGGGCTGCTTGCTTCCGACTGCCCAACAGGGTCTGCTGCAAGTGTGGCAGCTGCTGATCATGTGTTTAGCATGCAGACTGCTGTGGAGAATTGGTCACCTGCCCGCATACATAAAGCACCTCAGCACAATTGCATGTGGCTTTTACACCCTCTACCTGTTCTTTGGGCTGCACATGGTGTGGGTTGTGCTGCTCAGTCTTCTCTGCTACCTCATCCTCTTTCTGTGCCGCCACTCCAGCACTCGCGGCCCCTTCCTTTCTATCACAGTCCTCATCTACCTCCTGCTGGGGGAGCTGCATATGATGGACACAAACAGCTGGCACAAAATGAGAGGTTCCCAGATGGTAGTTGCCATGAAGGCGATCTCTCTTGCCTTTGACTTAGACAAAGGCACAGTGGAAAAAGTCCCCTCTCCAGTGGAGTTTATGGGCTATATTTACTTTGTGGGCACTGTCATATTTGGGCCCTGGATCAGCTTCAGCAGCTACAGGGAGGCAGTAGAAGGCAAAGAGCTTAGTGTCTCCTGGTTGGTGAAAGTGGCCAGCAGCTGGATAAAGAGCCAGTTATGCCTGGTGATCTCCAACTGTGTCGCTCCTTACCTCTTTCCCTACTTCATCCCTGTCTTTGGAGACAAATTACTAAAAAAGTGGCTGATGGGATATGAACACAGTATGGGCTTCCATTTTAGTAATTATTTTGTAAGCTATCTGAGCGAAACCACAACCACACTATCAGGTGCAGGCTTCACAGAAGAGAAGGACCATCTCAAGTGGGACCTTACAATGGCTAACCCACTAAATGTTGAGTTTCCCAGGTCTATGTCAGAGGCTGTTATTTCCTGGAACCTGCCTATGTCTCAGTGGCTCAATATTTATGTATTCAAGAAGGCCCTCAAATTCGGGACATTTCAGGCCATCCTCATCACTTACACAACCAGCACTTTGCTGCATGGATTGAGCTTTCACATTGCAGCTGTGTTATTTACCCTCGCCTTCATGACATATATTGAGTATGAGCTGAGGAAAAGACTGTCCATCATCTTTAATGCATGTGTCCTTTCCAAGAGATGTCCATCAGACTGCAAACACCAAAACAAGAAGGCATTTTGggtatattttattaatggagCATTTAGTGTACTAGCACTGGTGCACCTCACCTACCTGGCATCAGTCTTTGGCTCTAGCGCTGATGATATAGACTCAGATGAGGATGGTATGGCCAGTCATACTATTCATAAATGGAGTGAACTGAGCTGGACGAGTCACTGGTTGACCTTTGGCCTCTGGGTTGTATACCGCGTTATTATGTAAACTCAGACTAAGAGATTAGGTGGACAGGGAGCAAATAACAAACCTACAGATGATCTGCAGTGGTGGAAGCCAAGCTCCATATGACTTCACTGTGAATTCCTCATGCACTGGAGTACTAGAGAACAAAACTTCTAACAAATCTGGACATTATCTGATCATCAGTACAACTTGAGTCCGGAGGCTGTGGTACATGAGCACCATACAAGTGTCTCTGTGGCTTCTTTACTCATTTAAAGGCCACGTCATTCTTCCAAGAGCAGGCAGCAAGACCTAGAAACTGCTTTCCTTCattttatgtatatgtaatattacatatttatattgttatagtatatataatgcTATGTGATTGGATAATGACAACATGATTTTTAATCAAAGGACACTGTATTGTacatacactttttaaaagtattCTCATTTAAACTTTGCATTGACTTTACACAGATGAAGGAATTTAAGgtattttttaaagcagtgcTTGGTTAGTTAAACTAAAAAACACTAAAGCCCATTCCCAGATGGACATGGAATCAATCTGGCTGGCTTTGATATTGTTTAGGGTCATTTAGGGTGATTTTTCAaatgcaaagtaaaaaaaatcagtgaagtATTGGTTTGAATTATAGTCCATGGTTTGAATAGCATAAAATACTGGTGCAATAGTGCAAATCTGTTTCAAGTTAAAGGCTAataccacaaacacaaacattaaaagtGCAATAATTCAATAACTGAAACCCGAAGCTCAGCACATATAGTATTTTCTAGACTTACGTGCCAACTGTGTGCAAACGTCAGCTAGACTTTATGACTTATatgagaattttaaaaatctagtaGGAATTAGGTTTAGTGTTTAGGGAGAGAGGTCAATCACAAATATCTTACAGCTAACCACAGCACATATCATACTGTGTTTCACACACAAGTTCTGAAGCCTGTATTTGCCAATTTTTAAAGAGtattggatttatttttaatatgaccATGAGCCAGTGCAGATTCTAGTTTGTATTTAAGAATAATGTGAAACTACTATGATATTGACCTGTTTACAAGATTTAAATAGATATTTAAATGTGCATTCAGTGTTAAGTTATTGCAGATCTTAATATTTGATTTCTCTCTGTTATTCCTCTGTTCTTCCTCTTGTACTATTTTAGTCTTATGTATTTTAGCACACTCATGTATtagtatttttcattattttttgtttgtttgtttatttatttacattattattggTATATTCACCAGCGATCAGCTGATTCATATTGAGATGTGCCAAATGGAGCGATCAACTCATTAATATTTAACCATTTTCCCAAgctgtatgtgtttttataatCTTTGTATGATTTGTCCATCCAGTATTCATGAGCATTCTTATTTATAATCTCCCTTTGgtaataaaca

Function

GO:

id name namespace
GO:0006497 protein lipidation biological_process
GO:0060027 convergent extension involved in gastrulation biological_process
GO:0061355 Wnt protein secretion biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K00181 PORCN; O-palmitoleoyl transferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154744 lncRNA upstream 15873 11677903 ~ 11689674 (+) False uck2a
TU154619 lncRNA upstream 153516 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 346167 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 757201 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 788922 10916337 ~ 10916625 (+) True G130618
TU154767 lncRNA downstream 2800 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 267733 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 278787 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 280382 11994414 ~ 11994800 (+) False foxp3a
TU155067 lncRNA downstream 502972 12217004 ~ 12217214 (+) True G131279
XM_026924198.2 mRNA upstream 6179 11696883 ~ 11699368 (+) True magoh
XM_026926870.2 mRNA upstream 8756 11677511 ~ 11696791 (+) True uck2a
XM_034306529.1 mRNA upstream 8756 11677812 ~ 11696791 (+) False uck2a
XM_026921520.2 mRNA upstream 71703 11622310 ~ 11633844 (+) False LOC113530800
XM_026922330.2 mRNA upstream 71703 11622310 ~ 11633844 (+) False LOC113530800
XM_026921446.2 mRNA downstream 911 11714943 ~ 11716674 (+) True spryd4
XM_034306594.1 mRNA downstream 24307 11738339 ~ 11763591 (+) True col2a1a
XM_034306595.1 mRNA downstream 24307 11738339 ~ 11763591 (+) False col2a1a
XM_034306367.1 mRNA downstream 52008 11766040 ~ 11791173 (+) True cry3a
XM_034306366.1 mRNA downstream 52008 11766040 ~ 11791173 (+) False cry3a
XR_003403321.2 other upstream 71703 11622302 ~ 11633844 (+) False LOC113530800
XR_003403311.2 other upstream 71703 11622310 ~ 11633844 (+) True LOC113530800
XR_003403352.2 other upstream 71703 11622310 ~ 11633844 (+) False LOC113530800
XR_003403367.2 other upstream 71703 11622310 ~ 11633844 (+) False LOC113530800
TU154218 other upstream 831530 10870134 ~ 10874017 (+) False mrpl55
trnad-guc_1 other downstream 667967 12381999 ~ 12382070 (+) True trnad-guc_1
trnav-cac_9 other downstream 1347904 13061936 ~ 13062008 (+) True trnav-cac_9
trnaf-gaa_25 other downstream 1350018 13064050 ~ 13064122 (+) True trnaf-gaa_25
trnae-cuc_18 other downstream 1655516 13369548 ~ 13369619 (+) True trnae-cuc_18
TU156117 other downstream 1991224 13705256 ~ 13707550 (+) False LOC113527348

Expression Profile