RNA id: XM_026922330.2


Basic Information

Item Value
RNA id XM_026922330.2
length 1657
RNA type mRNA
GC content 0.38
exon number 12
gene id LOC113530800
representative False

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 11622302 ~ 11633844 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCctggttaaaaaataattaagggCTGGGTCTATCAAGCAAACTTAAAGATGAACTTCCTGAAACAAGAGAGAAGACTCCTACCATTCCCAAGAGATTCTGATTCAAGATGAAACCCCGAGTTATAATCTTTATTTACTTCGGAGGACCCATATTGCACTTTGTGAAATGTTACAGCAATGGTAATTTTGACAACGATCCAGATATATGTCAAACAATGGAAGTTCGTCACGGCAACAATCAGCCTCAGGACACTGAACCACCTTTTAAAGTTGACCCAGATAATATCACTGTTGATCTTCTAGATGTGGGAAAATCCATTGATGTAACACTGAAAGCTGACAGCGGTGAAACATTCAGAGGTTTTATGCTGGAAGCACGAAAATCAGGCAACCCAACACCTCAGGGGATTTTTTCTCTGTTGGACCCAAACCTCAGCAGACTTCAGCAATGCGATGGTATAAATGGTAAAGCTgtcacacaaacaaataaccaacGAAAGGCTGAAGTAAAGGTCAAATGGAATGTTTCTGAAACTGGAGTATATTTTTTCAGGGCTACATTCGTTAAGAGTTATAGTACATTCTGGCTTGCTTCCTCAACCCCGGTAACAACCTCTACACCAGCCCCTGTAACAACAACCACCGTAATGACATCAACATCAGCGATATcaacatcaccatcaccatcaacatcaacaccaacatcaacatcaacaacattaTCCTCAGTCACAACAACTGCTCCACCACAAACCTTTTTGTTTGAGTCATCTCTAACTCTACATTTGCTCAGTTACCTTTCTCTTGCTGAGTGTGGTCTTTTCCTAATGAAAACCCATGTATGTGCATGGATGAAGGTGACATCATTTCTGTCTTTGGCATTTTCATTGGCTGCTTTCATCCTCTTACTGATAGATAACAAACAAGTTGAGGGCAAAATACTGGCAGGAGTGGCAGCAAGCCTGAACTTGTGCCAAACTATTCTAATATTCTTTCTCTGTGGACCGAGCCATGAATTaaggaagattttctgcTGGGTGCTCAGAGTGGTTGCATCCATAAACTTTTGTTTTACAATTGCTGCAATATATGTTGGTCTTGTGGAGGATTGTTCCAAAAACCCCTGCTTCTGGCCTGCCATACTGATGGGAGTTTATTTAGCATGCCAATTGCTGtcatgtccattttttttatatggcaTACTAAAACAAAAGAACCGACAACAAACTGCATCAAGCAAACAGAATTGCAGGgTTTCTTACTGGTGTACATGCCTGGTAATTTTTAGTGGGATGAATATAGCATTTACTATAGCACTTGTATTAGGAATATTTTTGTGCCATTGTACGACTGATACCTGAAGAGTCAAAGAccatcatattttaattatgtgtataattttttacttatttgttaCTTTTCTACATCAATAATTTCAAGCTGTCTCCATTTAGTATGTACAGGATATATATTGGCTTTCTGAGATTTGGTTCTGAATGTGTTTTCACAtcatatattcttatatatcatatcttattaatgtattattccTGTTATCAATGCTTAATATCAATGTAGATtttgattttgtatttgtagagaaatatatatctttattcTGAAAAGAGAGAatctacagtcccctccgaaagtatt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU154619 lncRNA upstream 70279 11548962 ~ 11552031 (+) True G130960
XR_004578615.1 lncRNA upstream 262930 11355449 ~ 11359380 (+) True LOC117597850
XR_003402857.2 lncRNA upstream 673964 10944657 ~ 10948346 (+) True LOC113527270
TU154234 lncRNA upstream 705685 10916337 ~ 10916625 (+) True G130618
TU154227 lncRNA upstream 710935 10911164 ~ 10911375 (+) True G130611
TU154744 lncRNA downstream 44059 11677903 ~ 11689674 (+) False uck2a
TU154767 lncRNA downstream 82988 11716832 ~ 11717885 (+) True G131061
TU154974 lncRNA downstream 347921 11981765 ~ 11988425 (+) False foxp3a
TU154975 lncRNA downstream 358975 11992819 ~ 11993039 (+) False foxp3a
TU154976 lncRNA downstream 360570 11994414 ~ 11994800 (+) False foxp3a
XM_034306312.1 mRNA upstream 13753 11597781 ~ 11608557 (+) False LOC113538016
XM_026926870.2 mRNA downstream 43667 11677511 ~ 11696791 (+) True uck2a
XM_034306529.1 mRNA downstream 43968 11677812 ~ 11696791 (+) False uck2a
XM_026924198.2 mRNA downstream 63039 11696883 ~ 11699368 (+) True magoh
XM_034306353.1 mRNA downstream 71703 11705547 ~ 11714032 (+) True porcn
XM_026921446.2 mRNA downstream 81099 11714943 ~ 11716674 (+) True spryd4
TU154218 other upstream 748293 10870134 ~ 10874017 (+) False mrpl55
TU153993 other upstream 1058749 10556518 ~ 10563561 (+) True zmynd12
TU153960 other upstream 1263995 10357946 ~ 10358315 (+) True G130390
TU152708 other upstream 3309654 8307164 ~ 8312656 (+) True G129247
TU152202 other upstream 3650561 7968235 ~ 7971749 (+) True LOC113526371
TU154756 other downstream 71811 11705655 ~ 11709432 (+) False porcn
TU154757 other downstream 71811 11705655 ~ 11709432 (+) False porcn
TU154760 other downstream 71811 11705655 ~ 11707961 (+) False porcn
TU154763 other downstream 75610 11709454 ~ 11710545 (+) False porcn
trnad-guc_1 other downstream 748155 12381999 ~ 12382070 (+) True trnad-guc_1

Expression Profile