RNA id: XM_026915243.2


Basic Information

Item Value
RNA id XM_026915243.2
length 1787
RNA type mRNA
GC content 0.46
exon number 10
gene id smyd1b
representative True

Chromosome Information

Item Value
chromosome id NC_047602.1
NCBI id CM018548.1
chromosome length 30442583
location 15996325 ~ 16003311 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTACAGGACACTCTGCCATTATAACAGAGAATATAGATCTACAGAGACTGCACAACTACAAACATGGAGAACGTGGAAGTGTTTGACTCACCAGGAAAGGGACGTGGTTTAAGGGCCACAAAGGAAGTATGGGCTGGGGATGTACTGTTTGCAGAGCCTTGCTTTGCGGCTGTTGTTTTTGATAGTTTTGCAGCTCATGTGTGTCACAGCTGTTTCCGTCGGCAGCAGAAGCTGCAGCGTTGTGGCCAATGTCGGTTTGCCCAGTATTGTGATCGCACATGTCAGCGTGCAGCCTGGGAAGAGCACAAACAGGAGTGTGCTGCCATTAAGAGCTGTGGCAAAGCGCCCAATGAAAACATCCGACTTGCTGCTCGTATTATGTGGCGTCTTGATAAGGATGGAGATGTGATCTCAGAGCTTCAGCTCACTAAACTGAATGACCTGGAAGACCATATCTCAGACCTCCCTGAGATGGACATGAAGGAGCTCAAAGTAGATATTCACAACTTCTTGGATTACTGGCCCAGAACAAACAAGCAACACACGGTTGACAGCATCTCACACATCTTTGGATTGATCAACTGCAATGGCTTCATGGTAAGTGATCATAAAGGTCTGCAGGCGGTGGGTGTTGGTCTCTTCCCCAACCTCTGTCTGGTCAACCATGACTGCTGGCCAAATTGCACAGTCATCCTCAACAACGGCAATCACTCTGCCACCAATACTATGTTTCATACTCAGAAGAGAATTGAGCTACGTGCCCTGGGTAAGATCAGTGTGGGGGAGGAATTGACCGTGGCATATGTGGACTACCTGAATCTGTCTGAGGACCGCAAACGCATGCTTAAGCAGCAATACTTCTTTGACTGCACCTGTGATCACTGcaccaacaaaacaaaagatgACCTGAAGATGGCTGGTGCAGTAGTAGATGGAGTTAAGGTACCAGACGAGAAGGTGAAGGAAATAACAGAATATAGTCAGGAGATGCTGAAGAAGATGGAGAAGGCCCGTATAGATGCAAACTACAATGAGGTGGTAAAGATCTGCCGAGAGTGTGTGGAAAAGCAGGAAAACGTCCTGGCTGATACCCACATCTACCAGCTAAGGATGTGGAGTACACTCAGTGAGGTCCTTTCCTACTTGCAGTTCTTTGAAGAGGCAGCTACTTATATGCGGCGCAAGATGGTGGACGCCGGATACACGAAACTATACAATCCAAACAATGCCCAGCTAGGCATGGCTATAATGAGAGCAGGAGTGACCCACTGGCAGGCTGGACATATAGAGGTGGCACATGGCATGATCTGCAAAGCATATGCCATTCTCCTGGTGACTCATGGGCCCACACATCCCATTACTAAGGACTTAGAGGCTATGCGCACGCAGACAGAGATGGAGCTGCGCATGTTTAAGCAGAATGAGTACATTTACCACACCATGCGTGAGGCAGCGCTTAAAAACCAGCCCATGCAGATGATGCCAGAACCAGTTGAGGAGGGAATCAAGAGTCTTTTCCGCAAGAAGTGAcctcacacagctcacacattACCATCCTCACTATTACTCAGTATGGATTTCATCACTGTGACTTAAGATACTCAGTATCAGTATAACTGACAGCTATTTAAAACCACATGCAGTACTTTTCTGGATTTTATTAGTTAATATAATCAAAAGCATAGGTTTTAGGCTGTATTTTATAGGTCATATAATTCCTTTTGATTTAATAGCCTACACATTTTGAattgtgtattttgtaaataaagagtCATCACCAGTTGAAA

Function

GO:

id name namespace
GO:0048769 sarcomerogenesis biological_process
GO:0030241 skeletal muscle myosin thick filament assembly biological_process
GO:0051568 histone H3-K4 methylation biological_process
GO:0071690 cardiac muscle myosin thick filament assembly biological_process
GO:0018022 peptidyl-lysine methylation biological_process
GO:0017022 myosin binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0042800 histone methyltransferase activity (H3-K4 specific) molecular_function

KEGG:

id description
K11426 SMYD; [histone H3]-lysine4/36 N-trimethyltransferase SMYD

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU157835 lncRNA upstream 24216 15971860 ~ 15972109 (+) True G133617
XR_004578565.1 lncRNA upstream 355367 15630453 ~ 15640958 (+) True LOC117597798
XR_004578566.1 lncRNA upstream 355367 15637918 ~ 15640958 (+) False LOC117597798
TU157574 lncRNA upstream 389986 15597408 ~ 15606339 (+) True G133386
TU157510 lncRNA upstream 569953 15425189 ~ 15426372 (+) True G133342
TU157862 lncRNA downstream 8463 16011774 ~ 16018818 (+) False G133631
TU157869 lncRNA downstream 8463 16011774 ~ 16018783 (+) False G133631
TU157873 lncRNA downstream 39529 16042840 ~ 16043039 (+) True G133635
TU157977 lncRNA downstream 161375 16164686 ~ 16170597 (+) True G133721
TU157979 lncRNA downstream 167874 16171185 ~ 16171500 (+) True G133722
XM_026926150.2 mRNA upstream 68679 15923290 ~ 15927646 (+) True znf367
XM_026921411.2 mRNA upstream 76313 15907530 ~ 15920012 (+) False cdc14b
XM_034306613.1 mRNA downstream 2171 16005482 ~ 16010899 (+) True LOC117597822
XM_026928384.2 mRNA downstream 21061 16024372 ~ 16029359 (+) False znf366
XM_026928393.2 mRNA downstream 21171 16024482 ~ 16029359 (+) True znf366
XM_026928403.2 mRNA downstream 21760 16025071 ~ 16029359 (+) False znf366
XM_026927175.2 mRNA downstream 31191 16034502 ~ 16042147 (+) True mrps27
trnae-cuc_19 other upstream 1016421 14979833 ~ 14979904 (+) True trnae-cuc_19
TU156645 other upstream 1672875 14322172 ~ 14323450 (+) True G132595
TU156117 other upstream 2288775 13705256 ~ 13707550 (+) False LOC113527348
trnae-cuc_18 other upstream 2626706 13369548 ~ 13369619 (+) True trnae-cuc_18
trnaf-gaa_25 other upstream 2932203 13064050 ~ 13064122 (+) True trnaf-gaa_25
XR_004578524.1 other downstream 399437 16402748 ~ 16419509 (+) False si:ch211-166a6.5
TU158258 other downstream 576946 16580257 ~ 16594403 (+) False mtmr3
TU158254 other downstream 577142 16580453 ~ 16594403 (+) False mtmr3
TU158256 other downstream 577142 16580453 ~ 16594403 (+) False mtmr3
TU158261 other downstream 577142 16580453 ~ 16600585 (+) False mtmr3

Expression Profile