RNA id: TU2685


Basic Information

Item Value
RNA id TU2685
length 4924
RNA type TUCP
GC content 0.41
exon number 2
gene id AMCG00003648
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13025569 ~ 13042597 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCAAGAATTCTGCACTCGCACTGTACTCATTAAACGGgtgaaagcaatacaaaaaattgttttttccatctttaatgttaaactcatttttttgtttaatttagtttacatACACATCTTCACCTTTGCACCTCAGGCAATTTACAATCTTGTTTAACAAtacatcccatcccatcccatctcccccccccccccccaaaaaaaaaggcCAGCATTTAACATCATCAcgggggagaagaaaaacaaaatcgtTACGAACATCTGGAGcatctgaaaacaacaaaacaaaacagaaaagagcaTCGCTGTTCTTGCATACACGAGATATGAACGGGTAAAGGGTCTCTCTGCTCCAGTGAGTGTCTAAGAGGAGGTGCACCACAACTCAAAGATTTATACATCGTGGGGGGAAAAACAGCCCAGGTCAGGTTTCTGTGTCTCGAGACAAGGAACTATCCTGagctgttaaaaaacaaagtgcagaCATTGCTGGGCTGCTTCAAGTTTTGCAAGAGGGAATCAACTTTTGAGTGAATAGTGTCGTAAAGACAAAGCGATATTTAAAATCTTATACACTGGATTGTCTCAGACCTCTGTTAGAAAGACCTTTTACCTGATGTAATGATTGCGCAGGTTTCATTTGCCATTTAATAGTCAAAACATAAGCCCAACAGAATATTGCTTCTAACTACagcatacaaaattaaaaactgatcaAACATCTGTCATTCTGAGAGCCTAGAGAGGTTAGTGACCAATTTTTCTGTGAACACCTATGACTGCACTGGAGAAAAggtgttttgttggtttaaacCCTCGCAGTTACAATTCAGATCAATTCTGACACATTTCAACAGCTTCGGTCAGCTCTGAAGGAAACCCAGAGTAACTTTTAATCGTAAAAGAGTGGGCCATGTGTTTTGTTAAATGGAGACTCTCAAACTGATATACTATGCCTTTCTTTCTCCCTGGCTTTTAAAACGGCTTTGACATTTGCAAGAAGGTGTTGAAATGTGGAagaatgcaatttaaattacttctcctcagtaaaaaaacaacaacaaataaaccataCTCTATCAGTGTGTTATATACAAACTGGgtatcaaagaaaaacaaagcactatGAACAGCTACACTGGACAGGCTGTGGCACAATCACTGACCAGACAGAACTACCCACAAACAGGGTCGTTTTCAGGGCATCGCCAATACACAATTTTCAGATTCAGTTAGGCAGCCTAACCTCAAGACAAAACCAAGTGTAACCTTTAGCTGCCCTTTCAAGAATTTTGGATGTAGCGGGTGAACATGAGGACAATTGTTTGAATGTACTGAGGGCCGAGAAAGGAAACTGCATCTCCAGCTTTGAGGATGACATTAAAATATTcgaaatgtatttcttcagctCCTAAACATGACTCTGAAAACCATGGCACTTGTGAACTCTGTGTTGCTTAATTACAGCATGCAAGCCAGATTGACACCTGCCACACTTtgctaaaacatgttttacatgtttCATTGACTTGAATccaatacatgtatatatgtatatgtatatgtatacatgttctCTGTCTGCCAAGTGTCAATAGGGAGTCCATCGCTTCCCCTTGAATTGACAGCTGAGCTGCTTGGTTTTATATTAAGCAAGATGAAGTAGATGTCCAGTTATACCCGTGACAAGATGCCATGATACAGGCTAACAGATGTCACTGCCCTCCATGTCATTCTGCTGAAAcagatttcaatttcaaatctagagtccagaaaaacacagaatggCCAGGCAAAGCAGGGGTCGGGTTGATCATGCTATTGCAATCTCTGTTCCATGATCGATATCAACCCAAAGGAGAAAGGCACACAGGAAAACTGGTAGCATGCAAGGTGTAACACACTCCACACTATAAATGCTAACTTAGTGTTCCGATACTGGATGAAAAAcgacaaaaatatataagtaaagCCGTCCAATGTTCTCTATACAATGCCCCAGAATGTTTATTAAAGTAATCCTATTCCtggctgtgattatttattgcCACAGTAAACTATTCTCCCAAAGTAATATGTTAAATTGCGAACTGCAAAGTAAAGTTTTCTAAAAGAGACCGAACTCGGGGTGTACAGAACAACCAAGCAACTGCCCAAAATAAAGCATGCAacggggaaaaacaaaacctgaacGTTATTTCAGCAAACCTGCACAAGGAAGCAAGAGGAAGACAGAAAGGGTCTGGGTTTAGAAGGGTCCATCAAACCTGACTGTAAATGTTGAGTAGGCCTGattggaaagagaaaaaacaactatatagtttagaaatgtaaaaacatgaaacTGTTTTTGGTTACCCTTCTCCTGTGAAAGATCAGTGCTtggtcttatatatatatttacacatttaagaaGCTACAAACATACTGCATACGCCCCATCATCCCACCAATGCTCCTGCCCTTGGAATGCAAGTTTCAATGCTGTTTAGTGCATTTCCTCATAAAACCACACTGCTTATTCTCACCAAGCCCCTCCGAGAGAAATCATACACGATAAAAACATCCACGTTAAAGAAATGAGAGCCTGTCGAAGATAGGGGATGCTTACAAGAGATATTATTTGAACTGGGTTTTGATGTTTGATGTCACAAGATTTAATACCTTAAATGACCAAACTCAACTTCCCACAGAGAAATAAAGGTAGGACAGATAACGTCatattttgtcttgtttctcattgcagacaatcacacaatcacacattccACTGTCCAGGAAGCAAATGGTTATGACAGAAGTTTATTGAACATCTGATCATTATTTTTGAACCCgattcaaaatattgtatacagtttaattgatgatcttagtttttttttttttgtttgttttgttttttttaagtaatctgCAACATCACACATTAAATGCTATAATCAAAGTagtttaaaaacttttaaaataaactgctctTCATGAATAGCAATAACTGGGATTTAGGATTCTTGTGACCCTCAAACCGATTTTTTTGTAAGCATGAATGGCATTTGCTTTTTGATGCTTTGCATTTGACAGCAGAAACCAAAGGAACCTTCTGACTATGTAAAATATATCCTGTGTGTTCAAACAGAGAACACTTTCTTCAGAATAAagtggggaaaaacaaataagtaggTATTTCCATTAAGAAACAGATCATTTGGGAGTGACAGACGGTGTGCTGTCAGCATTAATAAACTGATTGTTTTAAGGTTGACCTATTGCAACGTGACCATCTTTCGTATCTTTGAGAGGAAAACATTTACAGCTTTACCAGACACAATACGGTCTCCATTCTTGCAATCGAACTGGGCTAATTACAACACTGCAGATTtcgtatttattttgtacactaAAAAGGTGTTATAAGTGTACAGACCTCTGCTTGACGTTTCTACTGTAAATGGGATCAACAACCCTTGAATGCAGACGCTTTTGCTAATTTTTCCTGCTGTACGACATGTAACAACTCATTATTTACCCCATGCAAGAAACACCACCCACACACCTCATATAAAACACCAGCTTTTCCACAAATCAAACCGGGGAATTATTTAATCCTGGGGGATTTCCCTATTCCCAGGACAGAAGGACAGAACATCTCCAACCCTTGCCTTGGACAATGCCAACCATTCAGGTTTTGCATCTTGGATTACTGGTCATCTTGAATAATTAGGCCAGTTATTTGTTCCAGTAGGGCTTGGCTCTCCGCGAACAGGCTTGGACAGCACAACCCTTTGGAAACCACAAGGGTCTGGTCACCTCCCACTTGCTCAACAGGATTAATGAAGGAGCTCCATGATAGTAACGCACCGCTAAAGGGAGCGCCTCATGCCAGCTATAAAGCGATGAGATGTACAATCTGTGGGCTGGTTCGTGCGAGCCGTCAGTCTTGGGACACATGATCAGAACCCCCCTGTTTCTGTTGTTGGtgcttttattaatgtattttattttaattggctttTATTTCATGCACCAGATCTAAGGAACATTTTACACCCCATCACTCATCCTAGACATGTTTGCACAGAATCCGTAACGGCAGACGGAGTAAAGAACTAAAGGACATTATGGTGAAGAGGAAACTTGCCGAGGATGATGGGTAAGGCAGTGCTTTGCTGAATAAAAGACCTATGAACGTCACACTTCAATTAACAGAGCAAAAGGCggcatttttattgttattctcattattattattaatttattttccctcctAAGCGAAAGATAAGATGAGACGCAGAGTGTGGAAATGGCCATTCTGCACATAACTTCCTCACCAAGAAGAGAGATGTTGGACTTCTCCACAAGGAAACTACCAAGCCACACTACGCCCCAGCCTGCACAACCCCCAGTGTCccatgacatttttgttttatctagTATAATACACTCTGTAGTAGACGGCTTTTGATCTCCATAGCGAGTATGAGTTGTCGAATTTGAGTAGGTACACTCCCCTCCCAGGATACTGATGGCTGCCGGCGTAGACCTCCTCGTGGCAGTCTCGCCGGTACACCGGCACTATCTCGTCCACCTGGGGCTTGTTGGTGTTCTTTTTGGCTTTGTCTTCCTCACTCTGGTTTTCACcttcttcctcctcctcatcgtCGCTGGACTCACTGACATGGACGCTGACTGCTGTGTTTGGAGAATCTGTCCATTCAAAGTACACTCCAAAGCCAATGTCATAGTGGTCGGTGGCAAACTCCCAGAAGAGGTAGGAGCCCTCCTCGTGCGTGGGCACGCGCACCGTCACCACCTCTCCCCGGCCCACGGTGATCACCGAGTCGGCGTCCTGTCGGATCTTCTCCTTGAAGTCTTTGATCTGCGGCCGTGTCCACATGGAGGGGGCAGCAATCACAGGGGACACCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2631 lncRNA upstream 133815 12902635 ~ 12903622 (+) False AMCG00003643
TU2587 lncRNA upstream 649379 12387603 ~ 12388058 (+) True G2139
TU2565 lncRNA upstream 777794 12220322 ~ 12259643 (+) True G2125
TU2511 lncRNA upstream 948451 12087537 ~ 12088986 (+) True G2086
TU2454 lncRNA upstream 1009244 12026126 ~ 12028193 (+) True G2042
TU2723 lncRNA downstream 32091 13074688 ~ 13080021 (+) True G2250
TU2742 lncRNA downstream 55964 13098561 ~ 13101316 (+) True G2264
TU2745 lncRNA downstream 59860 13102457 ~ 13102666 (+) True G2267
TU2760 lncRNA downstream 184638 13227235 ~ 13228357 (+) True G2281
TU2780 lncRNA downstream 204712 13247309 ~ 13254443 (+) True G2294
AMCG00003649 mRNA upstream 13198 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003641 mRNA upstream 111381 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003643 mRNA upstream 120435 12902566 ~ 12917002 (+) True AMCG00003643
AMCG00003642 mRNA upstream 135479 12891168 ~ 12901958 (+) True AMCG00003642
AMCG00003633 mRNA upstream 157080 12872513 ~ 12880357 (+) True AMCG00003633
AMCG00003647 mRNA downstream 10832 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003653 mRNA downstream 48496 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003655 mRNA downstream 113637 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003654 mRNA downstream 199454 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003656 mRNA downstream 277606 13320203 ~ 13325222 (+) True AMCG00003656
TU2385 other upstream 1460108 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1545994 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3256535 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3773969 9255828 ~ 9263468 (+) True AMCG00003551
TU1569 other upstream 4385033 8649125 ~ 8652404 (+) True AMCG00003534
TU2754 other downstream 112463 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 1375919 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2993066 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4639220 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 5095158 18137755 ~ 18142633 (+) True AMCG00003779

Expression Profile