RNA id: TU2742


Basic Information

Item Value
RNA id TU2742
length 2756
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G2264
representative True

Chromosome Information

Item Value
chromosome id CM030121.1
NCBI id CM030121.1
chromosome length 57050121
location 13098561 ~ 13101316 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaaatagaaGTTTATTGCGTCAAATGCATCAGAGATCAGCCTGTGCATAGAAAATAAAGATTCAGATCCAGTTTAACTTTATGTGCTTGAAAGGTTGATATTCAAGTGAAGACATGACACTCACAGACAGCAAAatcccaaaaatatatttgcttcTCCACCTTCTTCATCTTTAAGCCAAGGAACTGTAATTCAAATAGGCCTAATTGGTCATTACATTGAAATAGGCTGTAAGCAAGATAAAACACAGTACATGTTCCAACAGACTtagaaataatgaatatatcaatacaatatactgtTGGCCAGCACAGAGCTGTATGTAATATCTGCATAAGTCTGCGACAAATGCTAGAAGATGCATATTGTTCATTCtagctggaaaataaataacatttctgaCTAGTGAACTGAAAGTTTTCAATGGGAAATGACAATGTATCTGTAAccagcttttatttatattgtttgccccttcccctgagctattaactatgacatCTGGAATAACACACAATAGGACAGAAGTTTCTAAACCAAACTGGTGTTTATTCAGAGGATCTTTCATTTCCAAACCGTCTTGCCAGCAAAAACACTCAGCTCTACACTTTCTATTATTGCCGCTCCAGCTCAACTTGTGGTGCATCATCACACCCTGATATACCCCTCCGACACATCACCCCCACTCCCCAATCACCGCTCCCTGGCTGGACCACCCGGGgatgggggggatgggggggatggggggggtggggggcatgaAAACCAAAATACCCAACAATATCACTCTCTATCCCCAACACAAGAATTAAcactccccccacacacacacagtatacactgatcggccataacattatgaccacctgcctaatattgtgtaggtcccccttttgccgccaaaacagccctgacctgtcgaggcatggactctactagacctctgaaggtgtgttgtggtatcggcaccaagacgttagcggcagatcctttaagtccagtaagttgcaaggtggggcctgcatggatcggacttgtttgtccagcacatcccacagatgctcgattggattgagatctggggaatttggaggccaagtcaacaccttgaactcgtgattcatcagaccaggccaccttcttccattgctccgtggtccagttgtgatgctcacgtgcccattgtaggtgctttcggcagtggacaggggtcagcatgggcaccctgactggtctgcagctacgcagccccatacgcaacaaactgcaatgcactgtgtgttctgacacctttctatcagaaccagcattcactttttcatcaatttgagctacagtggctcgtctgttggattggaccacacgggccagccttcgctccccacgtgcattaacgcttttccttccttggaccacttttgataggtactgaccactgcagaccgggaacaccccacaagagctgcagttttggagatgctctgacccagtcgtctagccatcacaatttggcccgtgtcaaagtcgctcagatccttacacttgcccatttctcctgcttctaacacatcaactttgaggacaaaatgttcacttgctgcctaatatatcccacccactgacaggtgccatgataacgagattatcagtgttattcacttcacctgtcagtggtcataatgttatggctgatcggtgtttttatagcaaaatgtttttctggttatattattctgtattctgtgcAATGCACgattatatatttctatacatttgcaaagagaAAAGGAGACTTGGCCTTGTTTGAACCCCCTCAAGCCACAATTCCATACTCATGTCTTTTATGCTAATGTCGTCTAAAtaattcataatcacaatatatatatatatatatatatatatatatatatatatatatatatatattttttttttaatagcattaGGTTATATTATCAGAATTTCAAGGACAATGTTTAAATGACAATGTTGTTTTATAGCTGAAGCCATCAGTAAAGCTGACACAAGGAAAATGATTAACATGCTAAATAGGCTGAGCTAATTTTTTTGCTCTCATTTTATTTGCATCCACTTGGCTCATTACCAGAGacacaaaatataatctgcTGTATGTTctcaattgtatattttgttgcacatcTGTCTACAtcttttacatttgttatgattctttttttaatagtttttttatagttttatatactTCATTCcctaaatataaattaaactaatatattgtatacatttgtaatatacTATAcactttgtattaaaatgtgttattagtagtagtatttgatCAAATGTGAATTCCAGTAAAAGAGTTACACAGGTACAAGTATAAAGTTACAAGTGGTGGCATGtttcatatattatatttcagACTTCAGCACGTATTCCTATTAAATGGTTTCAAAAGCTGTCCAATGTAACAGTAAGTTTCTCCAGACCGTTCTCTAAAGTAGGACTGGCCAGATGAAATAACATCCAAGCTAGCTTCATAATGATCCAAGAAGTGTCATTCAGTTGGGAAATTGACAATTTGTTCATTCTAATTACAAGGGAAGGGAGGTACAGAGAACAGGTATTAAAACTGAAAGCTGGCATACAATAAgtacattaatattttacaatgtcaAATCAGTAATATGAATTGTGATaatcttatttaaaattatcTGGTTTTGTGGACTGTATAAATGAAGAGGAATGAGAATAGTGTTGTAGGAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2723 lncRNA upstream 18540 13074688 ~ 13080021 (+) True G2250
TU2631 lncRNA upstream 194939 12902635 ~ 12903622 (+) False AMCG00003643
TU2587 lncRNA upstream 710503 12387603 ~ 12388058 (+) True G2139
TU2565 lncRNA upstream 838918 12220322 ~ 12259643 (+) True G2125
TU2511 lncRNA upstream 1009575 12087537 ~ 12088986 (+) True G2086
TU2745 lncRNA downstream 1141 13102457 ~ 13102666 (+) True G2267
TU2760 lncRNA downstream 125919 13227235 ~ 13228357 (+) True G2281
TU2780 lncRNA downstream 145993 13247309 ~ 13254443 (+) True G2294
TU2819 lncRNA downstream 313615 13414931 ~ 13415156 (+) True G2323
TU2822 lncRNA downstream 384276 13485592 ~ 13485807 (+) True G2326
AMCG00003653 mRNA upstream 6467 13091093 ~ 13092094 (+) True AMCG00003653
AMCG00003647 mRNA upstream 43380 13053429 ~ 13055181 (+) True AMCG00003647
AMCG00003648 mRNA upstream 60963 13025569 ~ 13037598 (+) False AMCG00003648
AMCG00003649 mRNA upstream 74322 13020377 ~ 13024239 (+) True AMCG00003649
AMCG00003641 mRNA upstream 172505 12918837 ~ 12926056 (+) True AMCG00003641
AMCG00003655 mRNA downstream 54918 13156234 ~ 13206839 (+) True AMCG00003655
AMCG00003654 mRNA downstream 140735 13242051 ~ 13246855 (+) True AMCG00003654
AMCG00003656 mRNA downstream 218887 13320203 ~ 13325222 (+) True AMCG00003656
AMCG00003666 mRNA downstream 636286 13737602 ~ 13744368 (+) True AMCG00003666
AMCG00003668 mRNA downstream 695963 13797279 ~ 13797599 (+) True AMCG00003668
TU2685 other upstream 55964 13037437 ~ 13042597 (+) True AMCG00003648
TU2385 other upstream 1521232 11573731 ~ 11577329 (+) True G1989
TU2334 other upstream 1607118 11490185 ~ 11491443 (+) False AMCG00003606
TU1883 other upstream 3317659 9777508 ~ 9780902 (+) True AMCG00003570
TU1763 other upstream 3835093 9255828 ~ 9263468 (+) True AMCG00003551
TU2754 other downstream 53744 13155060 ~ 13156627 (+) False AMCG00003655
TU2954 other downstream 1317200 14418516 ~ 14419732 (+) True G2440
TU3283 other downstream 2934347 16035663 ~ 16039640 (+) False AMCG00003712
TU3719 other downstream 4580501 17681817 ~ 17683988 (+) True G3047
TU3792 other downstream 5036439 18137755 ~ 18142633 (+) True AMCG00003779

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) TU462158 True 460 lncRNA 0.45 2 NC_047622.1 672061 ~ 731313 (-)