RNA id: AMCG00014208


Basic Information

Item Value
RNA id AMCG00014208
length 1308
RNA type mRNA
GC content 0.56
exon number 9
gene id AMCG00014208
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 4568669 ~ 4583209 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCTCCCCGCGCCTGGAGACTTACTGCTGCCCCAACAGGGACGAGTCCACCGGCTACGTGGTCAACTTCCAGCCGCGCTTCTTCAGCGCCATCTGCGTCGGCAGCGGCAGCGTCAGCCTGGTCCTCGCCGTCCTGCAGATCCTGCCCAAGCGGCTGCGGGGCTACCGGAGACTGGGCCAGTACCCCCTCCCGAAGCCGGCCTCCTCCGCCCGCATCCTCCTCATCATCAGCCTGTGCGACGTGCTGGGATGCGCAGGGATCATTCTCAGATCGTCCGTGTGGCTCAGCTCGGAAAACTTCATCGCCAGGATTTCAGTCACCAATACCACGGAAGTGTGGCCGGCTACGTTCTGCGTGGGCAGCGCGATGTGGATCCAGTTATTTTATAGCGCCTCTTTCTGGTGGACATTCTGTTACGCTGTGGACGTCTATTTAGTTGTTAAAAGATCAGCTGGACTAAGCACCATCGTGTTGTACCACATGATCACGTGGGGGCTGGCGGTCTTGCTGTGTGTGGAGGGAGTGGCGATGCTCTACTATCCTTCCATTTCAAGCTGTGAAAACGGACTAGAACATGCCATCCCCCATTACATCACCACCTACGCGCCATTACTGCTCGTGCTAATTGTCAACCCGGTACTGTTTGGAAGGACCGTGTCAGCCGTTACATCACTACTGAAAGGAAGACAGGGGATATACACAGAGAACGAGAGACGACTGGGAACAGAGATAAAAACACGATTCTTCAAAATCatgcttgtttttgtaatttgTTGGCTGCCAAACCTGATCAACGAGAGCCTTCTGTTTTATCTGGAGATGCAGGCCGACATCAAAGCCAGTCACCTCAAGAATGTGAGAAACGCTGCCCTGATCACATGGTTTATAATGACCTCCGACATCACAGTGACATCAGTGTACCGCGTGCGTCTCGTCTCTCCCCAGGGGATCCTCAACCCCATGCAGGGCTTCCTCAACACCCTGGCGTTCCATGGCTGGACCGGCTTCGACGTCGACCTGAGCGTCCAGCGCCGCCGGGAGATCCCCTGGGACTCAGCCTCCACGTCGGCCGCAGCGGCGGGTGCCTACAACCCCACCGTGGGCTCCTCGCTCAACTACCAGGGCTACGTGCAGGAGGCCAAGAAGGGCATGAACGGCAACGGGCAGCAGGCCTCCGACGCCATCAGCGTCCTCTCCGAAGGTTCAGAGTCTAGTACAGTTGAAATCCACATTTCGAGTGAGCTCCGTGACTTTGAGGGCATAGATGCTGATGGGGAATCGATGGAAAACTCTGAAAAGCATTAG

Function

GO: NA

KEGG:

id description
K08470 OA1, GPR143; ocular albinism type 1 protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85500 lncRNA upstream 18667 4500864 ~ 4550002 (+) True G68422
TU85441 lncRNA upstream 272850 4294817 ~ 4295819 (+) True G68376
TU85439 lncRNA upstream 275143 4293326 ~ 4293526 (+) True G68374
TU85370 lncRNA upstream 436951 4127476 ~ 4131718 (+) True AMCG00014196
TU85358 lncRNA upstream 484705 4083763 ~ 4083964 (+) True G68317
TU85517 lncRNA downstream 1265 4584474 ~ 4588428 (+) False G68434
TU85518 lncRNA downstream 1265 4584474 ~ 4588428 (+) True G68434
TU85563 lncRNA downstream 64501 4647710 ~ 4648213 (+) True G68473
TU85589 lncRNA downstream 202117 4785326 ~ 4785601 (+) True G68497
TU85603 lncRNA downstream 273820 4857029 ~ 4857230 (+) True G68509
AMCG00014209 mRNA upstream 20262 4520802 ~ 4548407 (+) True AMCG00014209
AMCG00014207 mRNA upstream 69713 4460775 ~ 4498956 (+) True AMCG00014207
AMCG00014202 mRNA upstream 251990 4298341 ~ 4316679 (+) True AMCG00014202
AMCG00014201 mRNA upstream 277120 4290944 ~ 4291549 (+) True AMCG00014201
AMCG00014200 mRNA upstream 324647 4242810 ~ 4244022 (+) True AMCG00014200
AMCG00014213 mRNA downstream 140445 4723654 ~ 4746002 (+) True AMCG00014213
AMCG00014214 mRNA downstream 254514 4837723 ~ 4851433 (+) True AMCG00014214
AMCG00014216 mRNA downstream 368121 4951330 ~ 4958249 (+) True AMCG00014216
AMCG00014217 mRNA downstream 478623 5061832 ~ 5062272 (+) True AMCG00014217
AMCG00014218 mRNA downstream 496300 5079509 ~ 5079783 (+) True AMCG00014218
TU84895 other upstream 1858340 2706840 ~ 2710329 (+) False AMCG00014146
TU84896 other upstream 1858340 2706840 ~ 2710329 (+) False AMCG00014146
TU84897 other upstream 1858340 2706840 ~ 2710329 (+) False AMCG00014146
TU84898 other upstream 1858340 2709024 ~ 2710329 (+) True AMCG00014146
TU84815 other upstream 2438524 2126872 ~ 2130145 (+) True G67896
TU85565 other downstream 65991 4649200 ~ 4651964 (+) True G68475
TU85567 other downstream 65991 4649200 ~ 4651964 (+) False G68475
TU86015 other downstream 2762986 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 2830431 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 5419849 10003058 ~ 10008648 (+) True G69406

Expression Profile