RNA id: AMCG00014321


Basic Information

Item Value
RNA id AMCG00014321
length 5646
RNA type mRNA
GC content 0.47
exon number 41
gene id AMCG00014321
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9089874 ~ 9130531 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACAGCAGCATGGCGAGACGGGGGAGAACTGAGACTTTCCCTCATGTATCAATGGGGACAAAAACAACATGCCTCAGAGTCCTGcggttattatttattgcattttttcatGCGGCACAGGCCAACCAAGAAGCATTCATTCAATCAGATACCATTTTAGAGGTACTGCGGTTTGGTGAAGGAGGCATCTTGCAGaCAGAGTCTGAAATGGACCTCAGTTCATATCATCAAAAAAGTTCATCCCTACACCGAGGGAATTGCAGACCAATACAGTTCGAACCGCCGATGTTGGATTTCCATGAACAGCCGGTTGGGATGccaaaaatggaaaaagtttACTTGCACAATCCCAGTTCAGAAGAAACTATAATTTTAGTATCAATATCGGCAACAACGTCTCATTTTCATGCATCATTTTTTCAGAATAGGATCATTCCACCAGGAGGCAACACCTCTTTTGATGTAGTGTTCCTTGCACGAGTAGTGGGGAATGtggaaaatactttatttattaatacatctCATCATGGAGTGTTTACATACCAGGTGTTTGGTGTTGGCGTACCCAACCCCTACCGACTACGACCCTTCATTGGGGCAAGGGTTCCTGTAAATAGCAGCTTTTCACCGTTAATAAACATACACAACCCACACAGTGAACCACTACAGGTGGTTGAAATGTACTCAAGTGGGGGTGACCTTCACCTGGAGCTGCCTACAGGCCAGCAAGGTGGTACCCGAAAACTGTGGGAGATTCCACCTTTCGAAACAAAAGGTGTGATGAGGGCCAGCTTTTCATCGCGAGATGCCGATAATCACACAGCCTTCATcaggataaaaacaaatgccTCCAGTGAGGATGAGTTCATTATACTGCCAGTGGAGGTGGAGGTTACCACAGCACCTGGTATTTATTCGTCGATAGAGATGTTGGACTTTGGCACACTACGATCACAAGATCTTCCCAAACAATTAAATTTGCATCTTCTAAATTCAGGAATTAAAGATGTACCAATAACAagtATTAGACCAACACCATCAAATGAAGCTGTTACAATAGATTTTAAACCGGTCACATTAAAGGCAGGAGAAAGTAAATATACCAAAGTTGCAAGTATTAGTTTTGATGCTTCAAAAGCAAAAAGACCATCCCAGCTTTCAGGAAAAATAACCGTAAAAGCAAGAGAGAAAAGTTATTCTAAACTTGAAATTCCATACCAGGCTGAAGTTTTAGAGGGGTACCTTGGCTTTGACCACACAGCCACTCTGTTCCATATCAGAGACAGCCCCACAGATCCGGTGGAAAGGCCGATCTATCTAACCAACACCTTCAACTTTGCCATTCGCATCCATAATGTTTCGTTACCTGAAGAGGCAAAGACCATGTTCAATGTGCAGAATTTCACCAAACCAATCCTGATTCCCCCTCGTGAGTCCCGCTACATGTTTACACTTCACTTCACCCCTGCCAGACCATCTATCCACATAGACAGCAATATCCTGCTGGTCACCAATGCCTCGAAGTTTCATTTGCCTGTGAGGGCCTACACAGGTTTTTTAGAGCCGCTGGTTCTACCGCCAAGCCTGGAAGAACACATCCTAGACTTCAGCATACTCAGTGCCACTGAATCCAGTAACATTATATTTGTCGTCATGAACAGTAACCCTATTGagCTGGCAATTAAGTCATGGCAAGTCATAGGAGACAGCCTCTCTATAGAGCTGCTAAAATCagacaaaggaaacaaaaccgCTGTCCTGTCAAGAATTCGAGATCTACAAAATGGCACAGCGTCGGATCAGACAACTGTAATATTAGCTTCAGGCTACTATGCTGCATTTAGAGTCACACTCATAGCTAAGGAACTTGAAGGAATGTATGATGGAGCTATACAAATCACAACAGATTATGagATACTAACAATACCAGTGAAAGCTGTAATTGCAGTGGGCACATTAACCAGCTCACCAAAGCACATTGTTCTTCCAACTTCCTTTCCGGGAAAAATTGTGCATCAAAGTTTTAACATAATGAGTTCCTTCTCACAGAAGGTAAAACTCCAGCACATACGTTCTCTCACAGAGGATGTGCGATTTTATTACAAGAGATTCAAGAGTAATAAGGAAGAATTAGAGCCAAGAAGAAAATCCAAGgtagcaaatatttattttgatgctAGTTTGCAGTGTGGAGACCACTGTTATGTTGGATTACCTTTTATATCTAAATCTGAATCCAAACCACATGGGCTGATCATGCAGGAGGATATCTGGGATGCTGATGTGGATTTGCATCAAACGTTTCACAAGAGGTGGAGAGAACTGAAAGAGAGCTCTGGTCACGAGATTGAAGCGGAGTTTGAGGTGGATACTGATCTTCAGAAAAACGTTGAAGCCAGAATTACGGCCCAGATGATGTGGCCTTCAGTAATCAATACGGAGCGTCATATAATGTTCCCTCTTACAAACACCAACAGCTCCTCCGAGGAGGAGGTTGTTTTAGGAAACCCGGCTGATGTGCCAGTCTTTGTCCAGGTTCTTCCCTTAGCATTGTATCCCAACCCCTCAGCCTTCGCAGAAAAAATAGGGGAAAGgctcAGTTTGGGAAATATGGCAAACATTGATACCAGCACATTTGAATTCAGTGTTCACAGAAACCAAacaTCATTTCTTAAAAGTAGCACAGGGTTTGTAGAAGGATCTGCACGACCCATTGTTTACAACCTGCTGCTGTTGCCTGGAGAAGCCAAGTCCTTCACAGTGAAGTTTACTCCTGTCAGAAACCACACCGTTGCCTCGCTTATTGTCATCAGGAACAATCTTACTGTGGTGGATGCCATAGTAGTTCAGGGACAGGGAACAACAGAGAGTCTAAAGGTAGCTGGCAAGTCGCCTGGCCCAGGGAGTTCACTGAGATTCAAAATGACCGAGTCTTTGCTGAAGGACTGTTCAGAGAAAGTAAAATCTAAAGAGCCAAACTTCACTCTCAAGAGAACGTTCAAAGTTGAAAACACAGGACAACTTCCAATTTTCATCAGATCTACTGAAATCAGTGGCTATGCTTGTGAAGGATACGGATTTAAAGTTGTCAACTGTGAAGAATTTGCACTTAAACCAAATGCTTCAAGAGACATTGTTGTACTGTTCACACCAGATTTCACTGCTTCAAGAGTCATCCGCGAGTTAAAGCTTGTTACGGCAGGAGGCTCcgagtttgtttttgtattgaatgcATCACTTCCTTATCACATGTTGGCTACATGTGCTGAAGCCCTGCCCAGGCCTAACTGGGAGTTGGAACTGTACATCATAGTATCTTTGATTATGAGttccATGTTCCTTTTAGTGATCGCAACCGCCTACCTGGAAGCTCAAGGAATATGGGAACCGTTTAAGAGACGTCTGTCTTTTGAAGCATCGAGCACTCCCGTTGAGAGCGGGAGGCCATTTGATCTCAGGGAAATTGTAGGAATTTCATCCGATACAAACTTGAATGAATATGGAGATACAAACCACAACCTGACGAGAGGAATGTACAACTCGGGTGGGCCTTCATCGAGAGCCAACGCGGGAAACCATAGGCAGtgtaacacacacagcagcagaaacCCTATGGACTTTGAAGGCCTGAGAACCAGAATGAACAACCGGCCTATGCCACCCATCACACAACCTGGCAGCAAAGGCGGCAACGTTGGTTCAGACTCCAGCGCTGCCCCGTGTCAGATTAGCAACAGGAGGGTCCGGGCTGCCAAGcacaaccacaaccaccacGCGCACCACCAGCAGGCCCCAAGCCCCGTAGAGCAACAGACTCCGCAACCAGCAGTGCCTCAACAGCCACAGACGAGCGGCTGTCAAAAATCACACCCCGAAAGCAATGCAGGCAGACACAGCTCGGAGGACTCTGATTACACCAATCTCATGGAGGCCATGGACAAAGACCTGGAGCGGCCAGAGTCTCCTTCCACCCCTTCCACAGAAGTGTTCCAGGAACCCCCTTCTCCAGTGCCACAAAACAAAGTAAAAGGAAAAGTGCAACGTAAATCCAAGGCACAAAGGAAACgagaagaaaaagagaggagAACAAAGGGAAAGCCACAGGAAGACGAGCTCAAAGACTCCCTCGCAGACAATGATGACAGCTCCTCAACCACCACAGAAACATCTAACCCAGATATGGAGGCCAACATCAAGGAAGATCCAGAGAAGAGAGGACGCCCTTTCACACTTGACAAAGAGAAAGACGACAATCCGGTTTTTCACATGAAAcccaaaaacaagaaactgggCAGCACAAAGAAGGAGAACCAAACCGATGTGAAATCCAGTTCTTTGGAGCTCCCTTACACAACCCCCCTGGAAAGCACACAGCGCAAGAAGTTCACGTCGAAAAACCTTATGCACCAACCACTAACAAATGGCCCCAAATTAAGGAACCTACAGAAACCAAGAGCATCCTGTGGAAAGCCTGAAGACTGTAGACCATCTGCTTTGGGGAAGTTCCTGTCGAACGGGTCTGGCCAGGAGCTGGGAAACAGCAGCAGTTCAGAGGGGGAGAAAGACTCGCCTCCACCGGAGTGGGATTCGGTACCCATTCACAAAATCGGCTGCTCAAAGGACAGTCTTCAGCAGATCTCCATCCAGACCATGAATGCTGATGCTTTCTTAAAAAGACCCATCTCAGCCATATCCAGGACTTCTTCCCCACCGCCTACATCTTTCAACTTGGGAACCCGTGGATCTTACAGTAGTGTGGTGAATGCGAACAGTGAGACGGGCATCAAGAAATCCAGCGGAAACAAACACAAGCTGACAAAATCGACGTCTCTGCCTGGCAAGAATGGGAATCCTACGTTTGCGGCTGTTGCTGCAGGATATGACAAAAGCCCAGGTGGCAGCGGCCCAACGAAGGGCTCGGCCAGCAAAGCGGATGTCCTTGCAAAAATGACCGTTCCGAGCATGACCTCCTTCGAGAGCGATGGCTCTGAAAGTTCTGGATTGTGGAGTCCCATTGACAATTCTACCAGCCCTAGTTTCACATGTCTCAACTCCTTCTCTGCATTTGGACCCAATAACACCTTTAACCTCTCTGGAGtctTCGGTGTAACCTATCCTAAGACCTACAATCAAGACGCCCCGCAGAACTGGCCTGAGTTCACTCAAGTGTCTTCCTCCATCTGGGACTCTCCAGCCAGTGACTCACTGCCATCCTGGCCCACCAGCTCGGGCTCCCCCACGGCTCCCTCCACATCCATCCTGGGCAACACCAGCAGTCTCTGGTCTTCAACCACTCCGTTCAGCAACTCCATCTGGTCGACCAGCGTTGACAGCAACCTGCCCTCCTTCACTCCGACCACCACGACGGCCCTCACAGACCTGATGGGCAGCACCGAGCACCCCTGCGCCGCCCCCGCGCCCCCCTCCACGCCCACCACCGACATAGGCAGGACCTACAACCCCTGGAGCATGTGGCGCCCCACCCTCAGCCGCAGGAGCTCGGAGCCCTGGCCCAACCCCTCCACCTACCCCCCAGACAACGGCAACTGAGGAGCGTCGGCACTGTTTGGCCGGCCGACTCTCCCATTAAAACAGAGCATTGTATGCgatgtgcactttttttttttttttttttttttttaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86492 lncRNA upstream 199040 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 353935 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 953664 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1074871 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 1215132 7874527 ~ 7874742 (+) True G68982
TU86614 lncRNA downstream 236006 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 770919 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 843893 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 923960 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 924846 10055377 ~ 10055733 (+) True G69431
AMCG00014316 mRNA upstream 69241 9004500 ~ 9020633 (+) True AMCG00014316
AMCG00014313 mRNA upstream 117442 8943995 ~ 8972432 (+) True AMCG00014313
AMCG00014315 mRNA upstream 214042 8875167 ~ 8875832 (+) True AMCG00014315
AMCG00014314 mRNA upstream 265342 8795228 ~ 8824532 (+) True AMCG00014314
AMCG00014309 mRNA upstream 582187 8478982 ~ 8507687 (+) True AMCG00014309
AMCG00014323 mRNA downstream 6500 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014322 mRNA downstream 27213 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014324 mRNA downstream 128763 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014327 mRNA downstream 198159 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014329 mRNA downstream 312668 9443199 ~ 9458087 (+) True AMCG00014329
TU86046 other upstream 1673280 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 1740407 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4437910 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4437910 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6379545 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 872527 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 5206327 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6545100 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6545100 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6998994 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00063940 False 6262 mRNA 0.45 41 NC_007117.7 29313220 ~ 29377092 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_03622734_03659141.mRNA True 6221 mRNA 0.46 41 CI01000340 3621970 ~ 3659156 (-)