RNA id: AMCG00014660


Basic Information

Item Value
RNA id AMCG00014660
length 2764
RNA type mRNA
GC content 0.40
exon number 16
gene id AMCG00014660
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26036433 ~ 26052543 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGATGACGTGTCTGGGACTGAAAGTGGGTTAGAAGCTCCCCATGTCCACCGTCCTGCGCAGCAGCGTCCGTTTATTTAGAGTGGCAGATATACctcattttgcttatttttgaCTAAtgtaaatagtgtttttttttaattattattatttaggtcGCTGTAattaaaagaagcaaaaaaacaacaaccatgtACATCTTTTATAATGCCCTCTCTGTCCTGAGACTCTCTCTGCTGCTGACTGAAAGCTTGCACATCGCTTCAAGTTTCTATCTTCCGGGTTTGGCTCCTGTCAGTTTCTGTGAGAAAGACCAAGCAGCGAAAGACCATGAAGTACCGGACTGCAGGTCGGAAATTGAGCTGTTCGTGAACAGATTGGATTCTGTGGAGTCGGTTCTGCCCTACGAATACACAGCGTTTGATTTCTGCTCTAAAGACACTGAAAAACGGCCTTCTGAAAATTTAGGTCAAGTTTTGTTTGGTGAGAGAATTGAATCTTCACCGTATAAGtttcaatttaaaaagaaagaagaatgtGCACCTGTTTGTACCAAAACATATGACACAAGTAAACCTGAAGACAAACAAAAGCTGGAATTTTTGAAGAAAGGGATGCTTCTGAACTATCAACATCATTGGATTGTTGATAACATGCCTGTAACATGGTGCTATGATGTGGAAGACGGACAGAAGTTTTGCAATCCTGGCTTCCCTATTGGATGTTATGTGACTGAGGAGGGTCGACCAAAAGACGCTTGTGTTGTCAATTCAGATTTTAATGACAAAGATACGTTTTACATCTTTAACCATGTTGATATCACAATCTCATACCACGTGGTAGAGAATGAAGCAGCAGGAGCGAGCTATAAGCGCAGTCAGGAGAAACCTGATTGCACAGGTCCTCCCATGGACTTAAGCAATAAATTTTCCGGAGAACTCAAAATCACCTATACGTATTCTGAAGACAATACCATTAGATGGGCCTCACGTTGGGATTATATCCTGGAGTCAATGCCCCACACTAACATTCAGTGGTTCAGCATCATGAATTCCCTTGTGATTGTCTTGTTCCTCTCTGGTATGGTGGCGATGATAATGCTCAGAACTCTGCACAAAGATATTGCCAGATACAATCAAATGGACTCTGTtGAGGATGCCCAAGAGGAATTCGGTTGGAAGCTGGTCCACGGTGACGTCTTCAGACCACCGAGGAAGGGCATGCTGTTGTCTGTTTTCATCGGCTCCGGCACACAGATCTTCATCATGACTTTTTGCATGCCTGGGATTTTTATCACCTGCCAACAGAGGAGCCCTGATGACTTGCGCTGTGGTTCTGTGGGTGCTGCTGGGAACTCCAGCAGGTTTCGTGGCTGCCAGATTCTACAAGTGATTGTGTTCGCGGATTTCTTTCTGATGAACTTAATATTATGGGGAGAAGGCTCTTCAGCTGCCATGCCGTTTGGCACACTGGTTGCGATTTTGGCATTGTGGTTCTGCATATCTGTGCCCCTGACCTTCATTGGCGCTTACTTTGGTTTTAAGAAGAATGCCATTGAGCACCCAGTCCGCACCAACCAGATCCCTCGTCAGATTCCTGAGCAGTCCTTCTACACCAAGCCTTTGCCAGGGATCGTCATGGGAGGGATTCTCCCCTTTGGCTGCATCTTCATTCAGCTTTTCTTCATCCTCAACAGCATCTGgtCTCACCAGATGTATTACATGTTTGGATTTCTCTTCCTGGTCTTTATCATTCTGGTGATCACATGCTCTGAAGCCACAATCCTCTTGTGCTACTTCCATCTGTGTGCTGAGGACTATCACTGGCAATGGCGTTCTTTCCTGACTAGTGGATTTACTGCAGTCTACTTTCTTGTATATGCAGTCCATTACTTTTTCTCGAAACTTCAGATTACGGGATTAGCAAgtactattttatattttggataCACAATGATAATGGCTTTGATCTTTTTCCTCTTTACAGGAACAATTGGATTTTTTGCATGCTTTTGGTTTGTGACCAAAATATACAGCGTGGTGAAAGTGGATTGAGATGAGTTGAGCAAGTGTTGCTTTCACAGCTGAGGATCTGTCAGGTGGAGAGACGAACATGTGAATGGACCTCCTGGCATTGATGTGATTTaatcacaaattataataaaacctaACACTTGTAAATGTGTTTCCAATGCTAActacgttttttttgttttgttttagtagtaCAAAACACTATGAAggtgaattaaaaagaaaatgcatactATATGCCATATCATGCtacaggtaaaataaaataaaaaacgaagtATGTAAATATGACTTACCTTTTGATAATTTGATTCTAATTACCCTCCAAATACTAGGCTTAGGAAAGTCATGCATATCACTGAAACTTTACAGTCGGGTAAATATACttgtaaataacattttctaatgCTGAAGGAAAATAGAAAACGAGATGCGGGTGAATGGAGTCTCAGATCTTGAAGTAGGAAGCCTAAAACCTTtataaagtttttgtttttcatttttgttctcaTATTCTTGTGTTTGAAAGGTGCAGTCTAATCAGCTcgactttatattttttttatttaacttatatatttttgttttgcctttacACACTTTGTGCCTCTTGAGTATATTGATTTGTAAATTTATAGTAataaatgttgtacaaatggTCACTTGTAATTAgtcttcatttcagattttttagATATGTGAGGcgttctttaatatttttaggAATCTGtg

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89798 lncRNA upstream 25433 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 76731 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 265944 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 273691 25705458 ~ 25762742 (+) True G71763
TU89729 lncRNA upstream 288025 25745803 ~ 25748408 (+) True G71772
TU89834 lncRNA downstream 178676 26231219 ~ 26231565 (+) True G71859
TU89946 lncRNA downstream 852334 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 899753 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 974232 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1422521 27475064 ~ 27479444 (+) True G72072
AMCG00014661 mRNA upstream 94890 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014655 mRNA upstream 337505 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014657 mRNA upstream 405579 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014654 mRNA upstream 443866 25575240 ~ 25592567 (+) True AMCG00014654
AMCG00014652 mRNA upstream 462425 25565157 ~ 25574008 (+) True AMCG00014652
AMCG00014665 mRNA downstream 33316 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014664 mRNA downstream 115918 26168461 ~ 26172474 (+) True AMCG00014664
AMCG00014667 mRNA downstream 151340 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014668 mRNA downstream 265488 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014669 mRNA downstream 320681 26373224 ~ 26389223 (+) True AMCG00014669
TU89430 other upstream 3180787 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7762073 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8587980 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9567320 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 9903631 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1782960 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1816160 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2249830 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3798907 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4711808 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile