RNA id: AMCG00014664


Basic Information

Item Value
RNA id AMCG00014664
length 2040
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00014664
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26168461 ~ 26172474 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTGCTGGACGCTGGTCACCAGTTCCCTGGCTTGGGGGTTGGCACGTTTGCCAGGCATCACTCCGCCAGCGAGATGCAAGACAGAGACTTGAGCTTGGCGCAGAATAGCTTTGTCGATTCTGCACACATGGGGGCTTTTAAACTCAACCACGATCTTTCTCCGGGCCAGAGCTCGGCTTTCACCTCCCAGGCTCCGGGGTACCCCGCTGCGGCTTTGGGGGCGCATGCGGCTCATGTCACCTCGTATGCAAGTTCGCCTTTTAACTCCACCAGGGACTTTCTCTTTCGCAGCCGCGGCTTCGGAGAGTCGTCCCCGGCCAGCAGCCAGCATGCTATTTTCGGCCCCACAGCGGGGTCTCTCCATCACTCTCATACGGACACTCAAGGCCACATCTTGTTTCCTGGGATCCACGAGCAGCACGCCTCCCACGGCTCTCCAAACGTTTTAAACGGGCAAATGCGACTTGGACTACCGGGGGAAGTTTTTGGGCGATCGGATCAATATCACCAGGTATCCAGTCCCAGGACCGACCCTTACTCTGCAGCCCAACTGCACAACCAGTATGGCTCTATGAATATGAACATGGGCATGAATATGGCagctcatcatcatcatcacccgGGTGCCTTCTTTCGCTACATGAGGCAGCAGTGTATCAAGCAAGAGCTCATCTGCAAGTGGATCGACCCCGAGCAGCTGAGCAACCCGAAGAAGAGTTGCAATAAAACTTTCAGCACCATGCATGAGCTGGTCACCCACGTCTCGGTGGAGCACGTCGGGGGACCCGAGCAGAGCAACCACATCTGCTTTTGGGAAGAGTGTGAAAAGCCCTTCCAGTGTGAATTTGAAGGCTGCGACAGACGCTTTGCAAACAGCAGTGACCGGAAGAAGCACATGCATGTCCACACTTCAGACAAACCGTATCTTTGCAAAATGTGCGACAAATCATACACTCACCCCAGCTCTCTCAGAAAACACATGAAGGTCCACGAAGCCTCTCCTCCAGGGTCCGACTCCTCGCCTGCAGCCAGTTCTGGATACGAGTCGTCGACCCCCCCTGGCCTGGTCTCACCATCGACTGAAACGCAGAGTAACACCAATCTGTCGCCAGCATCAGCAGTGCACAATAACAACGGCCATACCAGTCTATCGTCTAATTTCAGTGAATGGTATGTTTAGGGCACAGTCGCCAAAAGCCCCAGAACAATTTaaccagaacacaaacaaacagcaaatctatgtatatataaaggcCTGTACAAAGAAGACCACATATAATGGACGATTTAATATGTGACATCAAGAATCGTGCTTTGTGAATACAATAACCAACCGAAGAACAACATCATTTGggaattattcatttttgtgtaaataataatattaatattaataataacaataataaaatcttCCTGTCTCCCCCTATGGTTGTAATGGATTTTGTCAATATGTGGTGTATAGATGTTCCTTCAATGGTAGCTATTTCTCTAACTGGACTTTTACTAGTGCACATATTAcgatggaaaaaaacaaaacaaaaaaaagttttctacTATGATGTTAAATATTGTGATCCCATTATAAGGCAACTTGATTGTAACTATACAACTATAAACTGGAAACAGTGCCAAAGTTAACACTTCACTCGAACAGACACAATATTTGCTTGTGAATGTATATTTTCGTTAGTTGGGTTTAACTTGTGATGTTTTGTGCTTTGCAAGTTGGATTTGTGAAATACTATTTGGAAGATTGTGGGGAAAATAAACGTTGTGCCGTTCAATTTTCTGTAACTACACCCTTCCTTTTGTAAATATCCGCTGCCATATTTAtccatttgtaattaaattatggtATTTACTTGCTACAgatgaaacaatatttataaagaatGTTTCTTaactataaatatgtaaaattgtGAGCTAAACACgatctgttctgttttgttttatgttgttattttctttcgAGGTATAAAACgtgttttctccatttcttgTGATAAGTTTTAAGAGTTTTACTgcatacaga

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU89798 lncRNA upstream 157461 26010799 ~ 26011000 (+) True G71826
TU89783 lncRNA upstream 208759 25952233 ~ 25959702 (+) True G71817
TU89742 lncRNA upstream 397972 25770209 ~ 25770489 (+) True G71784
TU89720 lncRNA upstream 405719 25705458 ~ 25762742 (+) True G71763
TU89834 lncRNA downstream 58745 26231219 ~ 26231565 (+) True G71859
TU89946 lncRNA downstream 732403 26904877 ~ 26911237 (+) True AMCG00014687
TU89956 lncRNA downstream 779822 26952296 ~ 26953253 (+) True G71963
TU89992 lncRNA downstream 854301 27026775 ~ 27027272 (+) True G71995
TU90084 lncRNA downstream 1302590 27475064 ~ 27479444 (+) True G72072
AMCG00014665 mRNA upstream 44693 26085859 ~ 26123768 (+) True AMCG00014665
AMCG00014660 mRNA upstream 115918 26036433 ~ 26052543 (+) True AMCG00014660
AMCG00014661 mRNA upstream 226918 25934481 ~ 25941543 (+) True AMCG00014661
AMCG00014655 mRNA upstream 469533 25660345 ~ 25698928 (+) True AMCG00014655
AMCG00014657 mRNA upstream 537607 25608988 ~ 25630854 (+) True AMCG00014657
AMCG00014667 mRNA downstream 31409 26203883 ~ 26244458 (+) True AMCG00014667
AMCG00014668 mRNA downstream 145557 26318031 ~ 26335361 (+) True AMCG00014668
AMCG00014669 mRNA downstream 200750 26373224 ~ 26389223 (+) True AMCG00014669
AMCG00014670 mRNA downstream 216758 26389232 ~ 26409091 (+) True AMCG00014670
AMCG00014676 mRNA downstream 413007 26585481 ~ 26588394 (+) True AMCG00014676
TU89430 other upstream 3312815 22855342 ~ 22855646 (+) True G71525
TU88725 other upstream 7894101 18271854 ~ 18274360 (+) True G71004
TU88601 other upstream 8720008 17403511 ~ 17448453 (+) False AMCG00014553
TU88385 other upstream 9699348 16465681 ~ 16469113 (+) False AMCG00014525
TU88218 other upstream 10035659 16129525 ~ 16132802 (+) False AMCG00014508
TU90165 other downstream 1663029 27835503 ~ 27841871 (+) True AMCG00014704
TU90175 other downstream 1696229 27868703 ~ 27879800 (+) True AMCG00014703
TU90214 other downstream 2129899 28302373 ~ 28304073 (+) True G72175
TU90740 other downstream 3678976 29851450 ~ 29851821 (+) True G72605
TU90928 other downstream 4591877 30764351 ~ 30805741 (+) False AMCG00014777

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00073285 False 3177 mRNA 0.42 3 NC_007120.7 31282161 ~ 31287010 (+)
grasscarp (Ctenopharyngodon idella) TU59360 True 5662 TUCP 0.44 2 CI01000009 1401932 ~ 1407627 (-)