RNA id: AMCG00014890


Basic Information

Item Value
RNA id AMCG00014890
length 2202
RNA type mRNA
GC content 0.61
exon number 21
gene id AMCG00014890
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 38553972 ~ 38572905 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGTTCCGGGAGCTGGGACATCTTCCTGGCGGAGGACGCCTGGAATGGAAGCTGGCAGACCGGGAGAGACACGGCGACTGTGAGAACCTTTGGAGCTCCTGCCCTCAGTCACCTgaaccaccccccaccccccaccccccacagccCTTAGCATGGAACTTCACCCCCAGCCCTGGTGGCCCGTTCTCTGCCCTCACCCCCAGCATGTGGCCACAGGACATCTTGGGCAGCATCAACCAGGATTCAGATGATCCAGAGATCCAATATGATGAGTTTGGTTTCCGGATCGACAATGaagaCCCGGGCCGCGTCACTGGGGGAGGGGTGCTGGCGGAGGACCCGCAGCAGCGGCTGCGCTGGCAGGCCCACTTGGAGTTCACCCACAACCATGCTGTGGGGGACCTGACCTGGGAGCACATCGCCCCCTGCCTGCCCCGCTCTGACCGGGTCGCTGCCCTCGTGCTGGGGGGCATCCCACACAGCATGAGGCCTCAGCTGTGGATGCGTCTGTCTGGTGCTCTGCAGAAGAAGCGCACGTCTGAGATCTCCTACAGAGAGATCGTGAAGAACAGCTCCAACGAAGACACTACCGCAGCCAAACAGatagaGAAGGACCTGCTGCGCACCATGCCCAGTAATGCGTGTTTCTGCAGTGCGGGCAGTGTGGGGGTGCCTCGGCTGCGTAGAGTTCTGAGGGCGCTGGCCTGGTTGTACCCCGATATTGGCTACTGCCAGGGCACCGGCATGgtggTGTCCTGCCTGCTGCTGttcctggaggaggaggactgCCTGTGGATGATGTGCTCCCTGATTGAGGAGCTGCTGCCCCCCTCCTACTTCACCTCCACTCTGCTGGGTGTCCAGACTGACCAAAGAGTGCTGCGCCAGCTTATTGTCCAGCACTTGCCCCGGTTGGACCGCCTGCTACAGGAGCACGACATTGAGCTGTCTCTGATCACACTGCACTGGTTTCTGACCGCCTTCGCCAGTGTGGTGAGCGTGCCACTGCTGCTGCGCCTCTGGGACCTGCTGTTCTACCACGGCTCAATCGTGCTATTCCAGGTCACACTGGGCATGCTCAAGATCAAGGAGGAGGAACTGGTGTCCTCTGAGAACTCGGCCTCCATCTTCAACACCCTGTCGGACCTGCCAGGGCAGCTGGGCGACGGGCGGCGTGTGCTGGAGGAGGCGGCTGCATTGGAGGGGTCCCTGTGCCCCCAGGCCCTGGAGGCCCAGCGGCGCAAACACATGGCCTACCTGCTGGCGGAACAGCAGGCCCAGCTCAGCAACACACACCCCCCTGCCTTGAGCCCCTCCCTGGGCAAGGTGGTCCGGCGGCAGGGCCCACGCCGCCGCTCGGCCCTGTCCTCCCTGCTGTTTGGTGACGAGGAGGCGGCTGCGGCACTCAAGGCCAAGAACGTGCGGCAGACAGAGCTGGTGGCAGCGCTTCGGGACGCCATTGCCCGTCTGGCACAGCACTTCCACTGCCTGGACCCCCGGCACTGCACcactgatctCACTCCAGATTACTCCATGGAGAGCCACCAGAAGGACCATGAGAACTTTGTCCTGGTATCTCGTTGCCGGCGGAGACGGGCCCGAGCTCTGCTGGACTTCGAGCACGAACACTGCTGGGTGGGAGAGCTCAATGGCCTGCGAGGGTGGTTTCCTGCGAAATTTGTGGAGGTTTTGGATGAGCGCAGTAAAGAGGCAGTGACGGATCTGGTGCGCGGGACGCTGTGTCCGGCTCTGAAAGCCATCTTCCAGCACGGCCTGAAGAAGCCCTCCATCCTGGGGGGGCCCTGCCACCCCTGGCTCTTCATAGAGGAGGCTGCTAGCAGAGAAGTAGAAAGAGACTTCAACTCTGTGTATTCCCGACTTGTCCTCTGTAAGACCTATAGACTGGATGAGGATGGGAAAGTTCTGACCCCAGAGGAGCTCCTGTACAGAGTACTGCATCTGTGGCTGGAGGTGCTATGCTCCAGTGTGCCGGCTGTGGAGAAGTGGTACCTGCCCTGGTCCTTCCTGCGCAGCCCAGGCTGGGTCCAGATCAAGTGTGAgctcagGGTTCTGTCCAAATTCGCCTTCAGTCTATCCCAGGACTGTGAGCTGGCTGATAAGAAACAGACCTCGCCGCTCATGCGATCGGGAGTGGTGGACATGCTGGTCAAACACCACCTCTTTAGCTGGGACCTGTAG

Function

GO:      GO:0005097,GO:0032313

KEGG:

id description
K20176 SGSM3, MAP; small G protein signaling modulator 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU92477 lncRNA upstream 240355 38311476 ~ 38313617 (+) True G74067
TU92327 lncRNA upstream 621177 37932522 ~ 37932795 (+) True G73944
TU92322 lncRNA upstream 669284 37876261 ~ 37884688 (+) True G73939
TU92298 lncRNA upstream 732610 37821086 ~ 37821362 (+) True G73917
TU92294 lncRNA upstream 807785 37745983 ~ 37746187 (+) True G73914
TU92590 lncRNA downstream 76017 38648922 ~ 38649249 (+) True G74157
TU92592 lncRNA downstream 78492 38651397 ~ 38655398 (+) True G74159
TU92634 lncRNA downstream 138803 38711708 ~ 38712076 (+) True G74192
TU92637 lncRNA downstream 140760 38713665 ~ 38714115 (+) True G74195
TU92644 lncRNA downstream 159813 38732718 ~ 38751366 (+) True G74202
AMCG00014887 mRNA upstream 87745 38458369 ~ 38466227 (+) True AMCG00014887
AMCG00014884 mRNA upstream 194841 38351247 ~ 38359131 (+) True AMCG00014884
AMCG00014880 mRNA upstream 296555 38252962 ~ 38257417 (+) True AMCG00014880
AMCG00014881 mRNA upstream 309832 38234697 ~ 38244140 (+) True AMCG00014881
AMCG00014882 mRNA upstream 326143 38220521 ~ 38227829 (+) True AMCG00014882
AMCG00014892 mRNA downstream 56216 38629121 ~ 38642517 (+) True AMCG00014892
AMCG00014893 mRNA downstream 70149 38643054 ~ 38646942 (+) True AMCG00014893
AMCG00014896 mRNA downstream 210490 38783395 ~ 38784172 (+) True AMCG00014896
AMCG00014898 mRNA downstream 389048 38961953 ~ 38968022 (+) True AMCG00014898
AMCG00014899 mRNA downstream 655022 39227927 ~ 39233005 (+) True AMCG00014899
TU92541 other upstream 121111 38432374 ~ 38432861 (+) True G74114
TU92227 other upstream 1035566 37518108 ~ 37518406 (+) True G73850
TU91690 other upstream 3159323 35390634 ~ 35394649 (+) False AMCG00014836
TU91622 other upstream 3593525 34942011 ~ 34960447 (+) True G73343
TU91608 other upstream 3773382 34780122 ~ 34780590 (+) True G73329
TU92678 other downstream 237788 38810693 ~ 38811128 (+) True G74227
TU92814 other downstream 763363 39336268 ~ 39475819 (+) True G74348
TU92948 other downstream 1033982 39606887 ~ 39621186 (+) True AMCG00014913
TU93044 other downstream 1292177 39865082 ~ 39872003 (+) False AMCG00014923
TU93045 other downstream 1292715 39865620 ~ 39872003 (+) False AMCG00014923

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00051660 False 3553 mRNA 0.48 21 NC_007114.7 33461075 ~ 33494163 (-)