RNA id: TU91443


Basic Information

Item Value
RNA id TU91443
length 1356
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id G73187
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 32789023 ~ 32790398 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatactctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatgctatcctatcaatatgggccaacatttctaaagaatgctttcagcaccttgttgaatcaatgccacgtagaattaaggcagttctgaaggcgaaagggggtcaaacacagtattagtatggtgttcctaataatcctttaggtgagtgtacattcatataataaaaacagacaagacAGAAACTCCTAtataaaaggtttatttttgtcattttaaatacagaacatacAATTGTTTAGAAACAATATCACATTAATTATGAGCTGTTTTAATATTGCAAGTTATTAATATGATAGTGTAGACATTTGCAAATAGTACCTTAACACAAATATTCAGTTTctcacattttcttcaaatttaAGTTAATGAAATAAGACATGAAACAAAGGCTCTTGAGTTTAAAAGATCAGGAAAGCAGACCTTAGGCAGGTCTGAATGTCTCTTAACTATTAACTACCACTATTGGATATAGATATCAGcagcacaaaaaagaaaaaaactccaACTTCTGACATGTCACTAACATTGTACAATTTGCCATTCCCTTAATCTATATTAGTAATTGAGAACTGTTCAGGCTCatggacaaaaacaaattatttacagCTGCGTATCAGGCATTTTAAGATGTGAAGTTCTCTTCAAGAAAAGGTGAGGTAAGACAACTTGTGAAACAGCTTTAGTGCGTGGCCTCATGTTCCTTGGTAAGcaccaaaactaaaatattgtcATGACAGCTCTTAATCTGTATCACCACTGCCTGTGTTTCTGACTAGTTTCTGTCAGGGTGTCCACATGACTCTGAAAACCGATTCTGTTCGATGCCAGCATCAGTATAAAATGTTGTAGTGCTTAATTACAGCAACACCAAACAGACTGTATGAGTCCAGGCCACTTGTGATGTGCTTGTCATCAGTACATCATACATCAAGTCCATTTAAAGATGTGTCATTTTCCCATTTGGTGTATTCTCTTCACTCTGAAATCCTCCATTCTTTGTTCCACATGATAGCTCCGGATTATCCTGAGGCGATTCTTTCTCACAGTCCTCCCACTGATCActgctgcagcattttttaTACACCCGATAA

Function

GO: NA

KEGG:

id description
ko04614 Renin-angiotensin system
ko04976 Bile secretion
ko04974 Protein digestion and absorption

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91439 lncRNA downstream 77320 32711247 ~ 32711703 (-) True G73184
TU91438 lncRNA downstream 77978 32710797 ~ 32711045 (-) True G73183
TU91437 lncRNA downstream 78908 32709844 ~ 32710115 (-) True G73182
TU91436 lncRNA downstream 80740 32708013 ~ 32708283 (-) True G73181
TU91379 lncRNA downstream 158502 32628529 ~ 32630521 (-) True G73132
TU91487 lncRNA upstream 279851 33070249 ~ 33071524 (-) True AMCG00014825
TU91497 lncRNA upstream 456939 33247337 ~ 33247621 (-) True G73232
TU91509 lncRNA upstream 529027 33319425 ~ 33319625 (-) True G73242
TU91512 lncRNA upstream 575310 33365708 ~ 33366083 (-) True G73245
TU91532 lncRNA upstream 855535 33645933 ~ 33702805 (-) True G73259
AMCG00014818 mRNA downstream 135603 32650176 ~ 32653420 (-) True AMCG00014818
AMCG00014819 mRNA downstream 140028 32647534 ~ 32648995 (-) True AMCG00014819
AMCG00014820 mRNA downstream 147091 32628832 ~ 32641932 (-) True AMCG00014820
AMCG00014816 mRNA downstream 233490 32502317 ~ 32555533 (-) True AMCG00014816
AMCG00014814 mRNA downstream 466264 32321974 ~ 32322759 (-) True AMCG00014814
AMCG00014823 mRNA upstream 1483 32791881 ~ 32793425 (-) True AMCG00014823
AMCG00014824 mRNA upstream 4607 32795005 ~ 32806293 (-) False AMCG00014824
AMCG00014825 mRNA upstream 280408 33070806 ~ 33119328 (-) False AMCG00014825
AMCG00014826 mRNA upstream 337280 33127678 ~ 33434382 (-) True AMCG00014826
AMCG00014828 mRNA upstream 1774088 34564486 ~ 34565202 (-) True AMCG00014828
TU91374 other downstream 169874 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 174217 32597462 ~ 32614806 (-) True G73127
TU91283 other downstream 525596 32263167 ~ 32263427 (-) True G73047
TU90581 other downstream 3390718 29389290 ~ 29398305 (-) True G72477
TU90285 other downstream 4456541 28329739 ~ 28332482 (-) True G72236
TU91480 other upstream 11460 32801858 ~ 32806295 (-) True AMCG00014824
TU91607 other upstream 1979185 34769583 ~ 34769979 (-) True G73328
TU91914 other upstream 2790228 35580626 ~ 35608677 (-) True AMCG00014839
TU91940 other upstream 3310960 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 3463376 36253774 ~ 36254187 (-) True G73612

Expression Profile