RNA id: TU91940


Basic Information

Item Value
RNA id TU91940
length 522
RNA type TUCP
GC content 0.41
exon number 5
gene id G73604
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36101358 ~ 36182351 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAATGTGTTGCATGTCCTTCAGTCCTGCCACTGATACTTGTATTTATCCTTTCTAGTATATTTCTAGATTGTAGGGCCTGGTATCTGTGACTCGCTTTTTTACGTATTGTAGATATAtagttatacatatatttagattaaaaaaaattgtatgcaCGAAATGGAATGCAGGGTGCTATCAATTCAGAGTCATGTTGTCAGAGGATATGTCGGTAACAAATCTGCGTCTTTCCCTCTGCAGGTCCTGGGATTTGAAGTTGACTCCATTAATTCGGTGCAGTTCTCCAATCATACAGGTTATGCACATTGGAAAGGGCAGGTCTTAACTGCCGATGAGCTCCATGTGCTCTATGAAGGACTTCAGCTGAACAATGTGAACCATTATGACTATGTCTTAACGGGATACACAAGAGATACATCATTTCTGGAGATGGTGGTCGACATTGTCCAGGAGCTGAAGAGGCAGAATCCTAACTTAGTTtatgtttGTGATCCAGTATTGGGTGACCATGGATCTATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91945 lncRNA downstream 43900 36055996 ~ 36057458 (-) True G73606
TU91890 lncRNA downstream 258367 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 636693 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 678223 35340673 ~ 35423135 (-) True G73548
TU91844 lncRNA downstream 740981 35275736 ~ 35360377 (-) True G73533
TU91948 lncRNA upstream 11697 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 291892 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 463708 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 507006 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 833599 37015950 ~ 37016173 (-) True G73776
AMCG00014843 mRNA downstream 28050 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014840 mRNA downstream 114790 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014842 mRNA downstream 286920 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014841 mRNA downstream 333968 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014838 mRNA downstream 413261 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014845 mRNA upstream 191186 36373537 ~ 36390780 (-) False AMCG00014845
AMCG00014847 mRNA upstream 282103 36464454 ~ 36526810 (-) True AMCG00014847
AMCG00014846 mRNA upstream 357467 36539818 ~ 36570308 (-) True AMCG00014846
AMCG00014849 mRNA upstream 620881 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014851 mRNA upstream 748656 36931007 ~ 36944739 (-) True AMCG00014851
TU91914 other downstream 492681 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1331379 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 3295063 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 3482209 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 3486552 32597462 ~ 32614806 (-) True G73127
TU91951 other upstream 71423 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 190800 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1142669 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1596982 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 2160971 38343322 ~ 38350291 (-) False G74087

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072947 False 1832 mRNA 0.41 11 NC_007120.7 19623406 ~ 19653458 (+)
grasscarp (Ctenopharyngodon idella) CI01000119_01597787_01616392.mRNA True 3172 mRNA 0.41 14 CI01000119 1597692 ~ 1618092 (+)