RNA id: TU92007


Basic Information

Item Value
RNA id TU92007
length 2582
RNA type TUCP
GC content 0.38
exon number 3
gene id AMCG00014845
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 36373151 ~ 36393493 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttttgtaatgcaaacTGCTGTGGAATTTAGAAAACGAGCAAATACTGTTGTCTAACGTTCTTTTTGTTTTACGTAaatcgtttgtttgttttggtatttagCCAAATTCCTTGCTCTTATCTACGAACACTTGGATCTACCACCTGAAGTGGTAAATCGCAAAAggcacattcattttaatacatattgtatatataacatacaaTGCATTAGTGGAATGGACTGTtttgtactataaaaacaaacGTTTTTGCattgctctttttatttttaagtatatgACCgtgaaaatgacattttgttCTGCAAAATGCTGTAAACGCTGTAAAGTATGAAGCTGGTGCAGCACGAAGGGAACTTTGATTGCATATCTGTGAGAGAATTCAGTCCTAATCACAGAAGTTAATGTAATCAAAGTTCCCTTCGTGCTGCAACAGCTTcatactttacagtgtaatcagaaaatgggccatttaatcagttcacatcagattaagtagctttacgatccgttaataatctttaattaatagCAATCTTTATTCTTACTCATTGTTGGGACACTTAAGGTTTAAATAATCACAttctgatcaaattaattacaacagattttgtttgtgtgtgtacaatattatatatacactggtttcgaatctacattaaacctgtgcattcagagaaatacacatgtacaatattttgtatgtattattatggatttccttgccaggtgtgcaacttacaaattcacataatacGTGGAAATTAGGTTATAATGTATACGTACACCACTACACATGCATAATCTTTTATTGTTGAActgtcaatctttaaaatatattatttctgttgtaaTTATTTCTGCCATATCTGCCATATCTAGCATGAAATTCATAAGATCCTTCATGACATGACTCAAGGGTGATTCACACCCCCTGACTACGTGGCGCTGCCCATgcagtgtctctgtctttgAATGATACACGCTTCTTTGTCACAAAGCGCTACTTTGTTGTTGTGAAGCCGCGGCTGCTCCAGCGCAGTCCCTCTAGAGAAGCTGCGCGGCTGTGCAGATTTTGCAGCCTGTGGTTGCGTCACATTGTGACGTATTTTCCGACTGGGTTCATGCAGACAGGTCACTTGGACAGATTCGTCGCAGAGTCTGCGAAAAGTCTGCGCAGACTTGGCAAAGTATGCGTGTCGTGAACGCGGCCTATTTATTAAGACAACAAGATGGCGGCCTCCATATGGCGAGTAGGACGAGTTGGGGCTCTCAAGtTTCTTCATATTGAGACCTGGGGATTTAAAAGGACTGCTCCATCTGCAGCTCTCTGCAGTAAATCACAAGAGCCCAAGAAAGCTGCAAAGAAGAAGGCCATGGCTCCACCAGCCAAAGAGCCAGAGTTTGACAATATGACCTACAAAAATCTTCAACACCATGAATACACCCCCTTCACCTTTGTGGACTACGATGTGGAATTGGCCAAGTACCGGCTGCCTCAGCCCTCTGCTGGCAGGATCTCCCCTCGCCACTGAGCTCCACACTAGGACATCTTGGGGGGGAAAACATTATTAACCTGATATCTACACTTTTCCAAATGTGATAATAAACCCCTTTAGCTGTACTCCAGGTataagtttgttttgttattgtcatttaaaGCCACAAACTGGTTGAGGACATGCTAGGATTAATAACTTACCAGCAACCAAACAAAGGTCAGGCAGAATGGCCACCTCTTCATTTAGACTGTTTATGGTACAGTAACTATTCTAGTTGTTCTCCATATGAAATGCAACTCTGGCTGTTAACTAAATTTACATTGCAATTAGAATGCATCAAAACAACATTGCAGTATATACTGTCAGCAGGTGGTGAAGGACCAACCTATAACAATTGTTGAAAGATTAGTGAGTTTAAAAGTATTCAGTATAACTTTATATTGCACATCTCTTTCAGGTAATTATggctttgcaaaataaaaagttgaacaTTCTCATGATCTATATGTATGGCCTATGAGTTATGGCATTGCTTATACAGTTTCAAAAGACATTGTAGCAACTAGTAATTTTGTAGTGCAGGTGTACAACACAACTGTTTAGGAACtggaaaaactgaagaaataaaTGTTGGCCTACAAATGTGGGCAAATCAttaaacagaataacaacaccAATACACTATTTAGGAAGCACTGGGAAGTACAGTGTTATACACAGACTAGAtcatatgattataattatgaaaaaggTAAGTCtctatgaaattaaataaattgcccATAACAAAACGCAGTTTAAATAGCTTCTCACTAAGCTCACGTCTTCATTTCCCGTCTATAAATTTAAGTATGggtaatttgttttacatactAAATAATTCAACATCACACTTGACTGGAAAGTATTTTGACACCTAATGTGTTACAAAGATGTCATTCCATCTGTTTTCCCCATTCTCTTTCGGTTCAGTCTTTCTTCTATGTTGAATTACCCCACTTTCTGTGGGGCAAAGTTGAATAGATGCAAGAAACCCAAAACCCACAGTACACATTGAAAAAGACAAGAATAAAACGGt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91948 lncRNA downstream 178901 36194048 ~ 36194250 (-) True G73609
TU91945 lncRNA downstream 315693 36055996 ~ 36057458 (-) True G73606
TU91890 lncRNA downstream 530160 35434969 ~ 35842991 (-) True G73568
TU91882 lncRNA downstream 908486 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 950016 35340673 ~ 35423135 (-) True G73548
TU92025 lncRNA upstream 80750 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 252566 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 295864 36689357 ~ 36730561 (-) True G73722
TU92141 lncRNA upstream 622457 37015950 ~ 37016173 (-) True G73776
TU92178 lncRNA upstream 779437 37172930 ~ 37173171 (-) True G73803
AMCG00014844 mRNA downstream 40670 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014843 mRNA downstream 299843 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014840 mRNA downstream 386583 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014842 mRNA downstream 558713 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014841 mRNA downstream 605761 35742534 ~ 35767390 (-) True AMCG00014841
AMCG00014847 mRNA upstream 70961 36464454 ~ 36526810 (-) True AMCG00014847
AMCG00014846 mRNA upstream 146325 36539818 ~ 36570308 (-) True AMCG00014846
AMCG00014849 mRNA upstream 409739 36803232 ~ 36804839 (-) True AMCG00014849
AMCG00014851 mRNA upstream 537514 36931007 ~ 36944739 (-) True AMCG00014851
AMCG00014855 mRNA upstream 650717 37044210 ~ 37047479 (-) True AMCG00014855
TU91951 other downstream 118964 36253774 ~ 36254187 (-) True G73612
TU91940 other downstream 190800 36101358 ~ 36182351 (-) True G73604
TU91914 other downstream 764474 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 1603172 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 3566856 32801858 ~ 32806295 (-) True AMCG00014824
TU92209 other upstream 931527 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 1385840 37779333 ~ 37783575 (-) True G73916
TU92499 other upstream 1949829 38343322 ~ 38350291 (-) False G74087
TU92533 other upstream 2018667 38412160 ~ 38413231 (-) True G74107
TU92542 other upstream 2038770 38432263 ~ 38432875 (-) True G74115

Expression Profile