RNA id: AMCG00014841


Basic Information

Item Value
RNA id AMCG00014841
length 2277
RNA type mRNA
GC content 0.50
exon number 11
gene id AMCG00014841
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 35742534 ~ 35767390 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAACTCTCTCATACTGCTAtggaaatgtacaaaacaattgATCGGTTGCGGTCTGCAAGACTGGTGGGGAAAAGCCTGGCTGAGTTTTATATgAGGAAGGGTGATCCCCAGAAAGCAGACACCTTTCTGCAGGACTCACTGAAGACTTACCTGGCTGAGGGCTGGACCCTACCTGTCACTCACACTAGAAAACAGATAGCAGAGTGTCAGAAACAACTGGGGCAGACTGAGAATTACCTTCAGACAAGTTCACTTTTAGCCAGTGACACCAATCTCACTTACGAGGAGAGAAAGCACTTCTGCCAGGAGATCCTGAACTTTGCCAACCGGCAGTCTGACAATCAAGTTCAAAAAGTAGTCCTGGGAATGAGTTCTTTTGCCCAGCTGCAGCAGCTACTTTTCTCTCCAGCCTCAGCAGTGGTGCATGTGGGAGGCTTGCTAGCTCTAGAGCTGAGCCTGCACAGCAACATGCCAGTGCCTGTTCATTTAGAGCAACTGGCAGCTAATGTGTACTTCAGCATCGAGAGAAACAGTGTCCGCAAGACTGGAGACCTGCTGGGCAAGCAGCGAgttggcagcagcagcaatggTATCGTTCACTTCCAAGCAGAGTCAGTAATTGGCAGTCTGCCTCGCACCAGTCCTCCCACACTTGAACTGTATGAGATGCATGACCGGAGCCCCTCAGACAATGCATTAAACTCCTCTGGTGTGGTCTGCAAGAATGTCCATCTGCTGCTACGCCGGCAAGAGAGTGTCTCCTCCATCGAGACTCCTTCAGGTGTGGCCATTGAGGACAGTGCCCAGATCCTCAAGATCAACAATGTCTCACTAATGCCAGGCATGAATACAATTCAGTTTACTGCACTGAGTCAAGAACCTGGTACGTACACCCTACGGCAGCTGTGTGCCACAGTTGGCAAAGTGCAGTTTGTTCTTCCCCACATTTACCCCATTGTACAGTATGAGGTTTATTCCCAGGAGCCCCAACTCACAGTGGAGCCCCTGACAGGTATTCCTCAAAAGGTGAAGTTCACAATTGTCACAGGCCACTACACCATTAAGAAGGGGGATGCACTTCAGCTCAGCAATGCTGATGCTATGCCAATACTCCACTCCACTGGCTGTAATGCTACAATCCTGTCCAACACTGGAGagagagtgggagagaccAAGCTCTCCATCCAGTCTTCTGAGAAGGTTACCAGCATCACTCTGCCTCAGACACCTGCCTATCACATGATAGAATTTGAACTGGAGGTTATGTGCCACATCCCTTCAGTCCTCCCCAAGCCCAGCGACAGTGAGAGACTCACCAATGGGGAGGTTCACCGGAGAACCAAAAGCAAACACAAGACTGACAGCTGCATGGCCTACATTGATCAAAAGCTTATATACAGCAAGCAGTCAGTCTTCTGCTTGTGGGAGATGAAGTGGACCGATGTTCTGCCTTCCTGCCTTCATTGTGTATTCTCTGTAAGCTTCTCACCAGCAACTGAGGAAGAGTCCTCCTTCAAGCCATACTCATATGAATTTCAGCTGGAGAATGTCTCTGTGAGTAACTCCTGTGCGGAATATGCATGTAAACCAGTGGCTGTACAACTGGAAACTCGGAAACTGTGccttatttgtaaaacaataaatacgaAAAATCAACATTCTCACTCAACTCTGTATAATGTGAAAGCTCAGATCCTTCCAACCCCAGGAGTTGAGCACTGCCACACTGGATCTCTCTGCTCTCTCGAAGTGTCCATCACACGGCTTTCTGACCTGGTAGAGCTGGATCGAGATGAGGGACTAACTGAATCAGATGGTCTATGCACCAGCAAGCTCATGTATGAAGTTGTGGATAACAGCAGTAACTGGGCTGTGTGTGGAAAGAGCTCAGGGGTAATATCCATGCCTGTGGTAGCCAGTGCAACGCACAAAGTCCAGATGGAAGTTATGCCTCTCTTCGCTGGAAACTTGCCTTTTCCCAACATCAGGGTCCTCAAGTACCTCCCTCATCACTCTATGCTCACTATTCAGTCTGACACTGACAGCTGGATTGAGAACGACAGTCTGTCTATTGACAAGGCACTGGATGAACAAGCAGACAACAGTAGCATTCGGAGTCGCACCAGCACGCACTCGACGGGCAGTGAACATAAGGGCTTGCCCATCCCACGCCTCGAGCCCTTCAGCCCTTGCCAGATCTTCAACAGCAGCTCTGGCGAGCAGGTCCTGGTGGTACCCAGCAAGGATGACCATGTACTGGAGGTCAATGTAACATGA

Function

GO: NA

KEGG:

id description
K20307 TRAPPC10, TRS130; trafficking protein particle complex subunit 10

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU91882 lncRNA downstream 277869 35391184 ~ 35464665 (-) True G73562
TU91864 lncRNA downstream 319399 35340673 ~ 35423135 (-) True G73548
TU91844 lncRNA downstream 382157 35275736 ~ 35360377 (-) True G73533
TU91845 lncRNA downstream 382157 35275736 ~ 35360377 (-) False G73533
TU91674 lncRNA downstream 467796 35273610 ~ 35274738 (-) True G73385
TU91945 lncRNA upstream 288606 36055996 ~ 36057458 (-) True G73606
TU91948 lncRNA upstream 426658 36194048 ~ 36194250 (-) True G73609
TU92025 lncRNA upstream 706853 36474243 ~ 36475948 (-) True G73667
TU92063 lncRNA upstream 878669 36646059 ~ 36652043 (-) True G73704
TU92083 lncRNA upstream 921967 36689357 ~ 36730561 (-) True G73722
AMCG00014838 mRNA downstream 54437 35634987 ~ 35688097 (-) True AMCG00014838
AMCG00014839 mRNA downstream 150078 35581715 ~ 35592456 (-) False AMCG00014839
AMCG00014832 mRNA downstream 561895 35172869 ~ 35180639 (-) True AMCG00014832
AMCG00014830 mRNA downstream 782285 34942975 ~ 34960249 (-) True AMCG00014830
AMCG00014829 mRNA downstream 810888 34910593 ~ 34931646 (-) True AMCG00014829
AMCG00014842 mRNA upstream 24958 35792348 ~ 35814438 (-) True AMCG00014842
AMCG00014840 mRNA upstream 210816 35978206 ~ 35986568 (-) True AMCG00014840
AMCG00014843 mRNA upstream 295229 36062619 ~ 36073308 (-) True AMCG00014843
AMCG00014844 mRNA upstream 406455 36173845 ~ 36332481 (-) True AMCG00014844
AMCG00014845 mRNA upstream 606147 36373537 ~ 36390780 (-) False AMCG00014845
TU91914 other downstream 133857 35580626 ~ 35608677 (-) True AMCG00014839
TU91607 other downstream 972555 34769583 ~ 34769979 (-) True G73328
TU91480 other downstream 2936239 32801858 ~ 32806295 (-) True AMCG00014824
TU91374 other downstream 3123385 32597462 ~ 32619149 (-) False G73127
TU91373 other downstream 3127728 32597462 ~ 32614806 (-) True G73127
TU91940 other upstream 333968 36101358 ~ 36182351 (-) True G73604
TU91951 other upstream 486384 36253774 ~ 36254187 (-) True G73612
TU92007 other upstream 605761 36373151 ~ 36393493 (-) True AMCG00014845
TU92209 other upstream 1557630 37325020 ~ 37325307 (-) True G73833
TU92296 other upstream 2011943 37779333 ~ 37783575 (-) True G73916

Expression Profile