RNA id: TU93328


Basic Information

Item Value
RNA id TU93328
length 529
lncRNA type sense_over
GC content 0.53
exon number 2
gene id G74736
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 40338064 ~ 40360225 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gagagagagagagagagagagagagagagagagagggagggagggaatgcACACTTTCCTCCAGAGAAGGGAAACAACAGTATCTATCTTTCAGACTCCCTTGTCCCACAACACTGACAACACACTGATCACCAACTTTCAGAGACTCTGAAATGGAGATccgcagagagagagggagagagaaaagttacAATCTGCAGCGTCTCTCCGGACTCCACAATAACGGCAACTTCAAACAGCCCCGATGTAAACCGTAAAGAGTACGAGAACTGCGAGGATTTGGAGGAAAAGTCTCACCCACGAAACACTACGCGCTGCCCGTCTGTCcgcgtctgtctgtgtgcgtctccgCCAGCAAGATAGAGCCAGCGACCcgccctccctctgtctcttttcCTCCTCCCGCcgtcttcctctctccctccctttccctctccctctctcacacaggcACCCACTCACCAGTCTGTAAAAACCTCTCCCTTTCTCCGTGCAGTTTATCAACacagtgctgtagtgtccagtcagt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU93315 lncRNA downstream 38885 40296861 ~ 40299179 (-) True G74725
TU93190 lncRNA downstream 198963 40101893 ~ 40139101 (-) True G74625
TU93199 lncRNA downstream 208698 40128921 ~ 40129366 (-) True G74633
TU93173 lncRNA downstream 294774 40043007 ~ 40043290 (-) True G74611
TU93153 lncRNA downstream 325983 40011069 ~ 40012081 (-) False G74593
TU93330 lncRNA upstream 5735 40365960 ~ 40368045 (-) True G74738
TU93465 lncRNA upstream 75215 40435440 ~ 40435670 (-) True G74845
TU93475 lncRNA upstream 285957 40646182 ~ 40646384 (-) True G74854
TU93481 lncRNA upstream 335762 40695987 ~ 40696241 (-) True G74860
TU93485 lncRNA upstream 343686 40703911 ~ 40704607 (-) True G74864
AMCG00014945 mRNA downstream 22126 40308887 ~ 40315938 (-) True AMCG00014945
AMCG00014946 mRNA downstream 45495 40281194 ~ 40292569 (-) True AMCG00014946
AMCG00014938 mRNA downstream 69579 40235058 ~ 40268485 (-) True AMCG00014938
AMCG00014934 mRNA downstream 173484 40162386 ~ 40164580 (-) True AMCG00014934
AMCG00014933 mRNA downstream 177715 40153419 ~ 40160349 (-) True AMCG00014933
AMCG00014952 mRNA upstream 34278 40394503 ~ 40398556 (-) True AMCG00014952
AMCG00014951 mRNA upstream 42541 40402766 ~ 40410777 (-) True AMCG00014951
AMCG00014953 mRNA upstream 50649 40410874 ~ 40416728 (-) True AMCG00014953
AMCG00014950 mRNA upstream 69157 40429382 ~ 40431042 (-) True AMCG00014950
AMCG00014949 mRNA upstream 77034 40437259 ~ 40438149 (-) True AMCG00014949
TU93316 other downstream 33979 40303231 ~ 40304085 (-) True G74726
TU93314 other downstream 43538 40292156 ~ 40294526 (-) False AMCG00014946
TU93302 other downstream 101269 40236402 ~ 40236795 (-) False AMCG00014938
TU93152 other downstream 325983 39984694 ~ 40012081 (-) False G74593
TU93146 other downstream 386994 39944730 ~ 39951070 (-) True G74591
TU93349 other upstream 41558 40401783 ~ 40405328 (-) False AMCG00014951
TU93466 other upstream 77114 40437339 ~ 40534709 (-) False AMCG00014949
TU93483 other upstream 337628 40697853 ~ 40698276 (-) True G74862
TU93491 other upstream 422615 40782840 ~ 40783230 (-) True G74870
TU93508 other upstream 546156 40906381 ~ 40909386 (-) False AMCG00014958

Expression Profile