RNA id: TU94241


Basic Information

Item Value
RNA id TU94241
length 925
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G75468
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 42643753 ~ 42645711 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCAGTCTCCTTGAGttcatactactactaccagCTCCACTCTGTTGTAGGGATTTAGGTTTTATGTAGTTGAGTTGTTCGCACTCGGCTTCCTGGGCTTTATAGTCCAGAATCATTTAATGGCAAACTAATGTATCAGTATTATTACACAATGTCGGGCTATGAACTCTGATTAACTATTTTCTCTAACCAGAGTGCGGGGTATTAGTTGGCGTGGAAACAGCGTTAAAGACGAATTCCACAAACTCATTGTACAACagttttaatccggcccctgcAAAGGTGGTGTATCATTGAGTAATTAGGACCTTAACAGCTTGTGAATTAGGAAATTgcgtgtgaaaactacaattcccttCAGCCATTGCGAGTGTCATTGGCACGAGGTGGGGTTTTAACAGCCCATCACAGGCTGAGTTACTGTCCATGCTCCTGTTCTTTCAGTAATCTGCAAtaaactcaactcaaaatgtccaagaaaagaaaaatcgacaAGGAAGATAGATTGTTTCAGGAAAGATGGGAGtgggaatatctgtttgtggagcagagtttaaaacctgtatgcctcgtttgtaaggagagtttagccatgatgaaataattaaatatacgGCGGCACTATGAGattaaacacaaagagaagtactatgggtgtttggagagagagtaaaggctgcacaaagtggctgaattaaaaaaaaaaaaactacagcaaaccatgtgTAGCAGGTGGCTACAATTTAAGACTAATAGGGTTTCTCAGTTTGATGCATCGTACCCTAATTTCAACCGAATTCAACTTGACTAATTGTCAAGTTATTGCTATTTAcacttgctgttgttttaagcAACAGATGCTATTTCACAGAGACAAGGCCATTCTGGCAGTGTTGGTTTCTGCTGTTGTTGGTAAGTCTGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU94240 lncRNA downstream 1320 42641484 ~ 42642433 (-) True G75467
TU94238 lncRNA downstream 2872 42639306 ~ 42640881 (-) True G75466
TU94196 lncRNA downstream 54130 42587012 ~ 42589623 (-) False AMCG00015035
TU94188 lncRNA downstream 63613 42556629 ~ 42580140 (-) False AMCG00015035
TU94189 lncRNA downstream 63613 42575958 ~ 42580140 (-) True AMCG00015035
TU94245 lncRNA upstream 59453 42705164 ~ 42705391 (-) True G75472
TU94287 lncRNA upstream 174322 42820033 ~ 42820232 (-) True G75507
AMCG00015034 mRNA downstream 4886 42636026 ~ 42638867 (-) True AMCG00015034
AMCG00015036 mRNA downstream 32146 42597937 ~ 42611607 (-) True AMCG00015036
AMCG00015035 mRNA downstream 54407 42580015 ~ 42589346 (-) False AMCG00015035
AMCG00015029 mRNA downstream 91193 42542587 ~ 42552560 (-) True AMCG00015029
AMCG00015028 mRNA downstream 119012 42523332 ~ 42524741 (-) True AMCG00015028
AMCG00015040 mRNA upstream 5234 42650945 ~ 42656759 (-) True AMCG00015040
TU94191 other downstream 109475 42523719 ~ 42534278 (-) False AMCG00015028
TU94183 other downstream 130179 42508869 ~ 42513574 (-) False AMCG00015031
TU94096 other downstream 351458 42291921 ~ 42292295 (-) True G75370
TU93975 other downstream 512521 42119287 ~ 42131232 (-) True G75272
TU93726 other downstream 1171559 41470294 ~ 41472194 (-) True AMCG00014971
TU94277 other upstream 154440 42800151 ~ 42803287 (-) True G75497

Expression Profile