RNA id: TU1714


Basic Information

Item Value
RNA id TU1714
length 2562
RNA type TUCP
GC content 0.36
exon number 3
gene id G1183
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 6057404 ~ 6087655 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

tgtttttttttttttttttttttTATGTGGTTTTACATGTGCACGTTTTATTTGGGTTTTTACTTGTCAGTGTACAGAGACACCCTGGCTTACAGATGCAAGGGACGTCCCTCATTCACATACCCTAGGGGAGTCCTGCAAGATCttcacgtttaaaaggtaaagctTTCCCCATCATTGCAACAATAACAAACTGGGCCAAGTTTAAGGCtgaagtacaaaaaaagaacaatgcagagtacataatttacataaacaCTATAACAAAGGTCATGTATGCCCTCAGTGATGGGGGCGAAGTGGTAGACGCTTCTGGAATGACTAAAAGAAGAAATGTACATTGAAGTCCTCTCGGGGAAAGCTCCTCCCCCTGTAAGACAACTACCTCCCTTTCCAGTTTCCGCATCCTGAGTCAATGCGCCATACAGAGCAGAAGCCATGCTGATGTCATCTTGTTCGAGAGGTTTAGGTTGGTCGTTTGATTGAATCCTACTGCATGGCCATTTATGGTGGCAACAGTTCTGTTTAGAAGCACTTCCTGTGGACGATGGAAGGGCCAGACTCATCATACTCCTGCTTGCTGATCCACATCTGCTGGAAGGTGGACAGGGAGGCCAGGATGGAGCCACCAATCCAGACAGAGTATTTACGCTCAGGGGGAGCAATGATCTACAAGAGAAAAGACGTGTTAGCTCTACTTGACCACAAGccattacaacaacaaaaacttctAAAAAGGTGCATCACCTTGATCTTCATGGTGGAAGGAGCAAGGGAGGTGATCTCCTTCTGCATACGGTCAGCAATGCCAGGGTACATGGTGGTACCTCCAGACAGCACAGTGTTGGCATACAGGTCCTTACGGATGTCCACATCACACTTCATGATGGAGTTGAAGGTGGTCTCATGGATACCGCAAGATTCCATACCTGTAATCAAGAGAAAGTTAAAATCTCAGTGAACTCGGCAAGAGAGCACAAAAACCcatagcattttaaatgcacagcaTAAAGCTTACCCAGGAAGGAAGGCTGGAAGAGAGCCTCAGGGCAACGGAAACGCTCGTTGCCAATGGTGATGACCTGCCCGTCAGGCAGCTCGTAGCTCTTCTCCAAGGAGGAAGATGAGGCAGCGGTTCCCATCTCCTGCTCGAAGTCCAGGGCCACGTAGCACAGCTTCTCCTTGATATCACGGACAATTTCTCTCTCGGCCGTGGTGGTGAAGCTGTAGCCACGCTCGGTCAGGATCTTCATCAGGTAGTCTGTCAGGTCACGACCAGCCAGATCCAGACGCAGGATGGCGTGGGGAAGAGCATAACCCTCATAGATGGGCACGGTGTGGGTCACACCATCACCAGAGTCCATCACGATACCAGTGGTACGACCAGAAGCATACAGGGAGAGCACAGCCTGGATGGCCACATACATGGCAGGGGTGTTGAAGGTCTCAAACATGATCtgtagaaaacagaaaatgtataaagtCAGATCTCTTGAAGTTTCCAGTGAATTCACCAAAATCAGAAGCCACTGCGTGATTAAAAAGGAGCAAAACCTCCTTGGCACACCATGCTATAAAATGTCCCACTCAAGATGGTTAGAAAAGTAAAGTGTTAGAAGCTACCATGCAGGAAATACATTTCAAGAGGAATAAACCTTTTGAACCTCCTATCAGGAGATCATGGCAGAGGGCAGAGAGCCTGAGAGGAAACCGATAGAAAGGAAGTGAACGAAAGAAAGGGACAAGAGTAGTAGGATTCATATAATTTGTCAAAGACGCACCTGTGTCATCTTCTCCCTGTTGGCCTTAGGATTGAGGGGAGCCTCTGTCAGCAGGACAGGGTGCTCCTCAGGGGCAACACGCAGCTCGTTGTAGAAGGTGTGATGCCAGATCTTCTCCATGTCATCCCAGTTGGTCACAATACCGTGCTCAATAGGATATTTAAGGGTCAGGATACCTCTCTTGCTCTGAGCCTCATCTCCCACATAGGAGTCCTTCTGTCCCATGCCAACCATCACTCCCTggagagaaaaaataatttgttaccaAACTACTCAGCAACAAGGACAGTGTAAAGAGTAATATTCAGAAGCcatgtaaaatgtgtttgagACAAGTTTAACTTCAGTTAGCACTGCTGTTCTTTTCAGTTTAATGCAATTATGGCATTTTAGAAGCTTGTTAAAATTAAGAACCTGCAAAATGAACACTACTGAACTGAATTAAACCATTTAGCAGTACAGTAGAACTCTCCGAAATTAATACTGCATTAAAAGGAGTTTCATGAATCaattgtataaaaatgcaaatacaatcACTGTCATAAAACAACTGGTTTAAAATGTATCGATCGTTTTAACACTGAAACTCTTCAGGGAATTAACGTTACCTGATGCCTGGGTCGGCCAACAATGGAGGGGAAGACAGCACGAGGGGCATCATCTCCAGCAAAACCGGCTTTGCACATACCGGAGCCGTTGTCAACGACCAGGGCAGCGATTTCCTCATCCATGGTGTGTATTAGTAGGTTATTGTGAACAAGGGATGTGAAGATCTTCTCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1687 lncRNA upstream 195526 5832309 ~ 5861878 (+) True G1161
TU1689 lncRNA upstream 216391 5833095 ~ 5841013 (+) True G1162
TU1672 lncRNA upstream 258553 5797393 ~ 5798851 (+) True G1154
TU1583 lncRNA upstream 267828 5737887 ~ 5789576 (+) False G1091
TU1745 lncRNA downstream 1854 6089509 ~ 6089855 (+) True G1199
TU1746 lncRNA downstream 2518 6090173 ~ 6090453 (+) True G1200
TU1747 lncRNA downstream 3190 6090845 ~ 6091157 (+) True G1201
TU1752 lncRNA downstream 27309 6114964 ~ 6115281 (+) True G1206
TU1866 lncRNA downstream 132269 6219924 ~ 6221396 (+) True G1287
XM_043241663.1 mRNA upstream 17560 6035257 ~ 6039844 (+) True smcr8b
XM_043242011.1 mRNA upstream 23606 6028082 ~ 6033798 (+) True mief2
XM_043242020.1 mRNA upstream 23606 6028092 ~ 6033798 (+) False mief2
XM_043242062.1 mRNA upstream 30282 6021733 ~ 6027122 (+) True alkbh5
XM_043236243.1 mRNA upstream 37449 5984438 ~ 6019955 (+) True myo15ab
XM_043241988.1 mRNA downstream 6694 6094349 ~ 6099830 (+) True fscn1b
XM_043242171.1 mRNA downstream 20206 6107861 ~ 6113525 (+) True zgc:77849
XM_043241721.1 mRNA downstream 138743 6226398 ~ 6231182 (+) True tlr2
XM_043241842.1 mRNA downstream 145381 6233036 ~ 6260748 (+) True prkcba
XM_043241833.1 mRNA downstream 145425 6233080 ~ 6253697 (+) False prkcba
TU1696 other upstream 176270 5879460 ~ 5881134 (+) True G1168
XR_006251062.1 other upstream 1080558 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 1112563 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 1699108 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 1700144 4356698 ~ 4357260 (+) True G824
TU1931 other downstream 198203 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 445847 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 623980 6711635 ~ 6845548 (+) True G1447
TU2148 other downstream 691963 6779618 ~ 6782141 (+) False rgs11
XR_006251795.1 other downstream 758845 6846500 ~ 6858568 (+) False LOC122351737

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU468964 False 1578 lncRNA 0.46 2 CI01000300 441452 ~ 475962 (+)
striped catfish (Pangasianodon hypophthalmus) TU407903 False 3246 lncRNA 0.42 2 NC_047617.1 15434122 ~ 15484581 (+)