RNA id: XR_006251062.1


Basic Information

Item Value
RNA id XR_006251062.1
length 2505
RNA type transcript
GC content 0.51
exon number 16
gene id gtf3c3
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4967186 ~ 4977263 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

cAGAAAAGCAGGAAGCGCAACTAACGTTTCTACTGTATATGACATGAAGCGGTAAACTGTACGATGTCCGAACTGAACGATTATTTAGAAGGAAAGATAACTTTCGAGGAGTTCGAAAGGCGCAGAGAGGAAAGAAAAGCGAAAGACAAGGAACAGAAGGGAGATGTGTCAGATGACGAAGAAGAAGCTGGTCAGGAGGACGCTGTTCCGTCCACTTCAAAATCATGCGCGAGAGGAACACGGAACCGACAAACAGAGACGGCAGAAGAAGGAGTCAGTCCATCTGTTCAGAAAGCTTTTGCCTCCATGATCGGAGAGGGACTGGAGGAGAGTGTGGAGGAGGATGCAGATAATGAAGAAGGAAAAATGGAGTGGAGAAACATTGGAGAGGAGTATGGAGACGAAGGCGAggacgacgacgatgatgatgacgacgatgatgatgatgaagaagaagaagaggaaaatgATGGCAATGAAGTCACACCTGGAGATGTGTTTGCCTTAGAAATGGAGCTGAACCGTGAGAATAAGAAAATGATGAAGgaGAGACGTCACCGCAGTAAGTTACCGCGGGCTCTCAGAGGACTCATGGGAGAAGCTAACATCCGCTACGCTAGAGGAGAAAAGGAGGATGCCATCCTGATGTGCATGGAGATCATTCGCCAAGCTCCTGTGGCATACGAGCCGTTCTCCACACTGGCTATGATCTATGAGGATCAGGGGGACATGGAGAAAGCGCTTCAGTTCGGGCTGATCGCCGCTCATCTGAACCCCAGTGACTGTGAGGAGTGGGTAAAACTGGCAGACATGTCCCTGGAGCAGGACAACGTCAAACAAGCCATCATCTGCTACACTAAAGCAATTAAATACGACCCCAGTAACGTTCAGTACCTGTGGGAGCGCTCGAGCCTTTATGAGCAGGTCGGAGAGCACAAGCAGGCCATGGATGGGTATCGCCGCATCCTCAGCCTGCTGCCGCCCTCGGATGGAGAACAGTTCATGCAGCTCTCACGAGACATGGCTAAgagTTACTATGAGAGCAGCGAGTTGCCGTCTGCTATAGGAGTCATGGAGGAAGCTCTGGAGAGACATCCTGAGCTCGTCTCGCATGAGTGTGTTAACATGGCTGCTGAACTCTTCATAGCCAATCACCAACACGATAAAGCTCTGGAGgCGCTGGTGAAGTTTTGTGGCATCGTTCTGAAAAGCGAGGAGACGGAGACGCAGATCGAGACGACTGACCAGACGTCTGCACAAGTTACAGaaggagaggagaagaaaaaagactCTAAAGAGGAAAAATgTAACGTTTTAGAGGTGGTGATTCCTGATGATGTTCCAATCGACATCAGAGTGAAGATGATGGTGTGTCTCATCCACCAGAATGTCATTAAACCTCTGGATCCCATGCTGACGTCACTGATGGAGCAGAGCCCGGAGGAGCTGGGCGATTTGTATTTGGACGTGGCCGAGGCGTTTATGGAAGAGGGCGAGTATAACTCTGCCCTCCCTCTGCTCTCCGCCCTCGTCTGCTCGGAGAGATACAACATGGCTGTCGTCTGGCTCAGACATGCAGAGTGTTTAAAAGCTCTTGGTCATTTGGAGGTTGCCGCCAAGAGCTACAGTAAGGTTGTTGAAATGGCTCCGCTCCATCTAGACGCGCGTCTGGCCCTCTCCACCCTCCAGCAGCAGCTGGGACGTCCCAACATGGCCCTCAAGGCCCTGGAGCCCATGTACGATGCTGAAACCCTCGCACAGGACTCTTCTGCTGCCCAGCAGgagctgaaGCTGTTGCTGCATCGCTCGACCCTTCTGCATTCTCAAGGACGCACCGACGATTACATCGATACTGTATTGACCATGCTGTCCATGCTCCTGAAGGTGGCGATGGTCAGGGCTCAGGTGTGTGTCGTCTCTGACATGTCCTCTGGAGTCAAACATCTGAAGCTTATAAAAGCGTCACGCAACAACCTGACAGAGATTGTCGACCAGGAGGCAGCGTACCTGGATGTGACAGGTAAGACGAGTGTCCTCTCTAGAGACGACTGGTGGAAGCTGTTGCAGCGCTGTTTGGCTGTTCTGTGTGAGGTGAAGCGCTTCGCTGAGGCCGAGTTATTAGTGGACTCCACTTTAGAGTACTATTCCTTCTACGACGATCGCGTGAAGCGCAAAGAGCTAGAGTACCTCGGCCTGTCCGCCGCCTTCCTCGACCGCAACTTCCGCAAAGCTTACGATTATATAAGGTCAGTACATGCAGGCGTTCAGAAACCAGCCCGATCATCCTCTTCATAGTTTGGTTGTTGGTCTCACGTTCTTCCATATGGCCTGTCAGAAGTTCGTCATGAAAAGGCACCCACTCATTGTGCAGGGTTTCTCGTTCCTGTGGCGCTATGTGGATCTCAGAGGTCATTGTCAAGAGTCTCTGTATAATATCGGCCGTGCTTTACACCAGCTTGGACTCGGCCATTTAGCAATTCACTACTATGAGAAAGCCCTCACCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1377 lncRNA upstream 22352 4938219 ~ 4944834 (+) False prkag3a
XR_006251100.1 lncRNA upstream 48391 4896796 ~ 4918795 (+) True LOC122346140
TU1369 lncRNA upstream 48822 4918028 ~ 4918364 (+) False LOC122346140
XR_006251098.1 lncRNA upstream 52659 4896796 ~ 4914527 (+) False LOC122346140
TU1364 lncRNA upstream 52764 4896504 ~ 4914422 (+) False LOC122346140
TU1368 lncRNA downstream 576 4977422 ~ 4977914 (+) True G948
TU1469 lncRNA downstream 2279 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 2279 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 2307 4979153 ~ 4996767 (+) False hecw2b
TU1485 lncRNA downstream 61874 5038720 ~ 5101322 (+) True G1016
XM_043240543.1 mRNA upstream 266 4960324 ~ 4966920 (+) True fastkd2
XM_043240572.1 mRNA upstream 12143 4945839 ~ 4955043 (+) True retreg2
XM_043240580.1 mRNA upstream 12143 4945842 ~ 4955043 (+) False retreg2
XM_043240678.1 mRNA upstream 22345 4938183 ~ 4944841 (+) False prkag3a
XM_043240687.1 mRNA upstream 23450 4938181 ~ 4943736 (+) False prkag3a
XM_043240418.1 mRNA downstream 2286 4979132 ~ 5025914 (+) True hecw2b
XM_043240764.1 mRNA downstream 169062 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240779.1 mRNA downstream 172182 5149028 ~ 5156356 (+) True ube2f
XM_043240427.1 mRNA downstream 181133 5157979 ~ 5294440 (+) True erbb4a
XM_043247655.1 mRNA downstream 463219 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XR_006251076.1 other upstream 22345 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 608890 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 609926 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1268093 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1626310 3334658 ~ 3340876 (+) True G727
TU1696 other downstream 902614 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1080558 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1309012 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1556656 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1734789 6711635 ~ 6845548 (+) True G1447

Expression Profile