RNA id: TU1468


Basic Information

Item Value
RNA id TU1468
length 1397
lncRNA type sense_over
GC content 0.32
exon number 3
gene id hecw2b
representative False

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4979125 ~ 5025914 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TGAACGCCTCCCTCTCGTGAGCTGCGCGGACgctcaaaaacaaaagcagacgCAAAGCCCGTGGAATTAATCCAACACAAATGCAAAGCGACGTTCGGCAGGACGCATCCCTCGAGCGTTCAGATGAAGCCGTGCTCCCGGCCACGCGCGTGTGTTTGTTGCGTTGCGAGTGTTTTGTTTTCGGTGGGTATGAGGTGGCACTGAGCGGATCCGAGGCGCTTTGTAAATGAATAAGAGATGAACGCGGCTGGATCCAGTCTGGACGCAGACCGACACTGCGCAGTAAATATCGTCTGGGCTGGGTTCGGAGAGGTTCGGTCGGGCTGAGACGGATGGTttaggaggaagaggaggaggaagacgcTCACGGAGGCCCTCGGCTGCGCACATCAGCTGTTCCGAGCATCCCCGTGTGTTTATTTGAGCTCATCACCACCTTTATTTGACGGAATCATTCATCCTGCCTTTCTGTCCGCTGGTACCTGCCCCATTGACCAAAACCCACACCATCTCAAGCAATCTCCTGAACCTGAAGGCAAAGTAAAGATCAGATTCCTTACATCCCAAATCCAATTTTTATTCCACTCTCGGCTGCTACAAATGGACAGGAGCAATCCAGCCTGCATTAAACAAGAGGAAGCAGTAATGTCTTTAGCAGATGATTTGGATAGAAAAAGTGATACAGACGTTTTtatattcagttcatttttgtcTCGTAATGCTCTAGTCCCGCTGAGACTCTGAATATGGACCTTTGAGAGTCCTGACTGGTATCCGAAAAGCCTTTGAGTTGGGTTTTCTTTTCTGGATTGGATGCTTATTTGATACCTCAACGGCATAAACGCAAGGCTGTTGGGTATTTCAGAAGTGGGTTATATAATCGTCTGTTTAGTTGCCAAACCCAATTCTGGAGAACTTGGAAAAGGAGGAAACCTTGTCAACTAGTGCTGTGAGTGGCTTTTGTTGGCCTATTTGGGCCTAAACCCAAAAACAACCTCTGCATCACTTCCACCATTTAGATGTTCCCAAAAAACCCACATCTTCAGAAGTAGTTGTGTTTAAGATACCTCGTTAGGAATTTCAGAAGTCAAATACTCATGATATCAGAACTTAAGGAAGGAGAAACCCTCTGCTAACTAGGGCTTTTGCCAACAGACCAATTTTGGGACTGCACCCAAATCTCTGCATTACTTGAAAGACTTCAAAAATGACGCTTTGAGTGATCTGGCTGGGATTAGATGCTCTTTGAGATGACACCGCCACTTCCAGTGAACTTAAGGAAGGAGAAACCTTATACTGACTAGGACTTGGTCCTGAATCCAAATCCCAAACCCCTCCCCCCACCCCCCTCCTTTTTGGCCGTTTGGCCCCTATTTCTTACCTCCATCTCATCCCGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1368 lncRNA upstream 1239 4977422 ~ 4977914 (+) True G948
TU1377 lncRNA upstream 34319 4938219 ~ 4944834 (+) False prkag3a
XR_006251100.1 lncRNA upstream 60358 4896796 ~ 4918795 (+) True LOC122346140
TU1485 lncRNA downstream 41953 5038720 ~ 5101322 (+) True G1016
XR_006251106.1 lncRNA downstream 130723 5127490 ~ 5138854 (+) True LOC122346173
TU1514 lncRNA downstream 159955 5156722 ~ 5156981 (+) True G1036
XR_006250916.1 lncRNA downstream 407845 5404612 ~ 5408298 (+) True LOC122344626
TU1543 lncRNA downstream 596447 5593214 ~ 5626276 (+) True G1064
XM_043240480.1 mRNA upstream 1890 4967186 ~ 4977263 (+) True gtf3c3
XM_043240764.1 mRNA downstream 149141 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240779.1 mRNA downstream 152261 5149028 ~ 5156356 (+) True ube2f
XM_043240427.1 mRNA downstream 161212 5157979 ~ 5294440 (+) True erbb4a
XM_043247655.1 mRNA downstream 443298 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XM_043251527.1 mRNA downstream 596875 5593642 ~ 5600055 (+) True lancl1
XR_006251062.1 other upstream 2307 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 34312 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 620857 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 621893 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1280060 3636707 ~ 3699093 (+) True G749
TU1696 other downstream 882693 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1060637 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1289091 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1536735 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1714868 6711635 ~ 6845548 (+) True G1447