RNA id: XM_043240427.1


Basic Information

Item Value
RNA id XM_043240427.1
length 7836
RNA type mRNA
GC content 0.44
exon number 27
gene id erbb4a
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5157979 ~ 5294440 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCGGAATTCAGCGCAGAGTGATGACAGTCCCAACGCAGTCACATTTAGACAAGGAATAACTCACTTGCAGCTCTGTCATTAAATCAACTGATCCAGTTTTGCTTGCAGACATAAACCCAGGCGCAAGTCTAGACCATGCGCTCTATGTGAACAGCTGCGCAAAGACGCACAGGCTGAAAGACATTTGACAGCTCGCCAACGGGACACTGGAGTGGACATGTGAAGAAATGGATATGCAGCCTCTTCATGTGATCAAAATGCGATCTgacatcatcatcctcctcatcctcactgCTGTGATTGTTCCCCAGTGCACCTCGCAGTCAGTGTGTCCTGGCACTGATAACAAGCTCAGCACGCTGTCGGATTTGGACCAGCAGTACAAAACTCTTCGCAAGTTCTACGAGAACTGTGAGGTGGTCATGGGTAACCTGGAGATCACCAGCATTGAAAGAAACCGCAATCTGTCTTTCCTCAAGTCCATCCGTGAGGTGACGGGATACGTGTTGGTGGCTCTGAATCAGTTTGACTATCTTCCTCTGGAGAACCTGCGGATCATCCGAGGCACTAAACTGTATGAAGGACGATACGCTCTGGCCATCTTTCTCAACTACAGACGAGATGGCTACTTCGGCCTCAGACAACTCGGACTCAAGAACCTgacagAAATCCTGAACGGAGGTGTGTATGTGGATCAGAACAAGTTCTTGTGTCACGCTGACACCATCCACTGGAATGACATCATTAAGAACCCCCGTTCTGAACTTCTGGTGGTTCCTTCCAACAACAGCGGCAACTCATGCAGACGGTGTCACAGATCTTGTAATGGACGCTGCTGGGGTCACCAAGAAGACCAGTGCCAAAGCTTGACAAAGACGGTGTGCGCAGAGCAGTGTGATGGACGCTGTTTCGGTCCGTACGTCAGTAACTGCTGTCACCGTGAATGTGCAGGAGGCTGTTTTGGACCCAAAGACACCGACTGCTTCGCTTGTACCAACTTTAATGACAGCGGGGCCTGTGTGACGCAATGTCCTCAGCCATTCGTCTACAATCCAACAACCTTCCAGCTCGAGCACAATCCCAACGCCAAATACACCTATGGAGCGTTCTGTGTCAAGAAATGCCCACATAACTTTGTGGTGGATCACAGCTCTTGTGTCAGAGCCTGTCCGAGCAACAAGATGGAGGTGGAGGAAAATCACATCAAGATGTGCATCCCATGCACTGACATCTGTCCGAAAGTGTGTGACGGTATAGGTACCGGCAGTCTTCAGACGGCTCAAACTGTAGATTCCAGCAACATTGAGAAGTTTGTCAATTGCACCAAAATCAACGGCAACCTCATCTTCCTCATCACAGGCATTAAAGGGGACATGTTTCATGGCATAAAAGCTCTGGACCCTGATCGGTTAAATGTATTCCGCACCGTCAGAGAGATCACAGGTTTCTTGAACATTCAGTCTTGGCCGGAAAACATGACAGATCTTGGCGTTTTCTCAAACCTTGCCACCATCGGAGGACGCTCTCTGTATAGtggTATTTCTCTGCTGATCCTGAAGCAGCGCTGGATCTCTTCGCTGAAGTTTCAGTCTCTGAAAGAGATCAGCGCCGGTAACATCTACATGACCAACAACAGCCAGCTCTGCTTCTACAACACGGTGAACTGGACCAGTCTGTTCCGCACCAGCACCCAGAGAGCTCTGATCAAGAACAACAGGGACCCCAGAGACTGCACTAAAGAGCAGATGGTCTGTGATCCGTTGTGTTCGGAGGAAGGATGCTGGGGTCCCGGTCCAGACCAGTGTCTCTTGTGCAAATACTTCAGCCGAGGAAAGACGTGTGTCAAGTCCTGCAACTTATATTATggGGATGTTCGAGAGTACGCCAATGGCTCGGTTTGTGTTGAGTGTGACAGCCAGTGTGAAAAAGCCGGAGAGAAAAGCTTGACCTGCCATGGTCCGGGTCCAGATCACTGTGTGAAGTGCTTGCATCTCAAAGATGGACCCAACTGTGTGGAGAAATGCCCTGATGGTCTTCAGGGAGCAAACAGCTTCATCTTCAAATATGCTGAGACCAACAACGAGTGCCATCCGTGCCACCCCAACTGCACCCAGGGcTGTACTGGACCCAGAGTACAAGATTGCATTGGCATGCTAGACAGGACTCCTCTGATTGCAGCTGGGTTAATTGGGGGTCTCTTTGTGATGGTCATCATAGCTCTGGGTGTGGCTGTTTACGTCCGTCGAAAGAGCATTAAGAAAAAGAGAGCTTTGCGTCGTTTCCTGGAGACTGAGTTGGTGGAGCCGTTGACGCCCAGTGGTACAGCACCAAACCAAGCTCAGCTGCGAATACTGAAGGAAACTGAGCTCAAGAGAGTCAAGATTCTGGGAGCTGGAGCCTTTGGCATGGTCTATAAgGGAATCTGGGTTCCAGAAGGAGAAACTGTGAAGATTCCCGTGGCTATAAAGATACTCAATGAAAGTACAGGACCTAAAGCCAATGTGGAGTTCATGGATGAGGCACTGATCATGGCCAGCATGGAGCATCCTCATCTAGTGCGTCTTTTGGGGGTCTGCTTGAGTCCCACTATTCAGCTGGTAACTCAACTCATGCCCCACGGCTGCCTGCTGGACTACGTACATGAACACCAGGAGAACATCGGCTCCCAGCTGCTGCTCAACTGGTGTGTGCAGATCGCAAAGGGTATGATGTACCTAGAGGAGAGGCGTCTGGTGCACAGGGACCTCGCGGCCCGTAACGTCCTGGTGAAATCTCCAAACCACGTCAAGATCACTGATTTTGGACTCGCTCGACTGCTGGATGCTGATGAAAAGGAGTATAATTCGGACGGAGGGAAGATGCCAATCAAGTGGATGGCCCTGGAGTGCATTCATTACAGAAAGTTCACACATCAGAGTGATGTATGGAGTTATGGTGTGACTATCTGGGAGCTGATGACGTTCGGAGGAAAGCCCTACGATGGGATTCCCACACGCGAGATTCCAGACATCTTGGAGAAGGGCGAGCGTTTGCCCCAGCCGCCCATCTGCACCATAGACGTCTACATGGTGATGGTCAAATGCTGGATGATTGATGCTGATAGTCGGCCTCGGTTTAAAGAACTCGCTGCAGAGTTCAGCCGCATGGCACGAGACCCTCAGAGATACCTCGTCATACAGGGGGACGATCGCATGAAGCTTCCCAGCCCCAACCACAGTAAGTTCTTCCAGAGTCTTCTCGATGAGGAGGAGCTGGATGACCTGATGGACGCAGAGGAGTACTTGGTTCCTCAGACTTTCAATATCGCTACCTCTTCTTACACATCTTCTTACACAAGACCACCAATGGATACCAGTAGGACACAACTCAAGTGTCGTGAGAGAGTTTTTATCCCAGAAGACGGGATGGGAGCTTGTTCTCATGATACTTCTGGTACAGCGAGTGGCGTCTTCATTCCTATAAGCACACAAGGTGCGGGTCTCGAAGCCCTTGAGGAACAACACTGTAATGGGAGCTTGAAAAAACAGCCCGTGTCTGCTGGAGACGACTGTGACAGCCAGCGCTACAGCGCAGACCCAACTGTGTTTTTCGCAGAAAGGAATCAGAAGGCCACTGGTGAAGATGGTTACATGAGCCCTATGAACAAATCAGCCTCAGACCATCTTAGCCCTGTCGAGGAGAATCCTTTCGTAAACCAGcggaaaaatggaaatattacTGCACTGGACAACCCGGGTTATCACAGCACCCCTGATAGGAAACTCAAGGGTGAAGATGAATACATCAATGAACCCCTTTACCTCAACAcatacaacaacaacatgaaCCAGGAGATTATGAGGAAAAATGGAGCTTCCATCCCTCTGCAGATGACAACAACAGCCAACACCGCAAGTAGCCACGTTATCCTCCCGACACAAACTGGGAAAGCCCACCACCACGGCCAGGGAACACATGTTCATTTCGCCGTTCCACCTGTTCAGCCCCCCCAGACAAGATCGATGAGCCAAAATGGCCAGCATTCCCAGTCGCCACACGGTGCTGAATCCAATTCCTCCAGCATGTCTGGCAATCCCTCCTTATTAACCCAAATCTCCCTCGTCAGCCAACAGATCCAACCTTGTCTGGCAAGTCAGTCTGGCTCTACAACTCATCCGGCTCAAGTGTCGAAATCTGCAGTCACCGGTAAAAGTATATCCGGCCTTCCCGGCCACCTTGTCTATCCAGGTAACATGCTTCAAACGGGTCATTCTGGTACTGTAATGGTCGACAGAAAGTCAAAGAAGAATTTTGATAATCCTGACTACTGGCAGCATAGTCTACCGCCCAAGGTGACCCAACAGAACCCTCAAGATCCAACTCAAGTGTGCAAAAGCAAACATCTTTACAGGCACAGCATCCGAAGTCGCATCGCCATGGCTGACAACCCTGAATATCTTTCCGAGTTTAACAAGAGGCCAGGAACGGTTCTGCCACCTCCACCTTACCGGCACAGGAATACGGTAGTGTAATGCCGCAGTTCTAGAGAGCCAGATTCTTCCACCAGCACCGTATGCTAATTTGGAATTACCGAAGAACAGGAAAAGTCCCAACTTCAGGAATTACTGAAGGAGACTTATCAGACTTTACAAGGAAAACCGATCAACCAAAGTGCCTCTAAATTATTCCAAAAGCTATTCCATCTTTTCTATTCCAACAAATCAGAATGTATTTAGATGTACATTCTTTAAAGGGAAAGTGTAAACCAAAAATGGGTATTCTGTATCATTTACCTTCCCTCATGTTACTCCAAACTTAAAGCACTTTCAaactcaaatgaaaatattttcattttcgaATCCTGATTGATATGTCTCTCCATTGAAGGTCCATTgcaccaagaaaaaaaattaaaattttgattagaccagaataaaaatgacactttttttcagtgtacaacaaaactttcaaaaagttcataaaataaatccaTATGAATTGTTTTTTGTCACTTGTCAAGCAAGTATGGTTAATCTTCCATTTACCGTATTTGATAAGCTCTATGTGCGCGCATTGCTcagtgtttatatatgaaaaaatgccTAAATTGCATAATCACATTAAGCAATTGTGTCTCTGCAGAAGATTTAGATTAAACCTCTTTATACAATCTAAAAATGCTGGATTAAATACAGGTTAAATGTTTAACCCAATCTTCTGGGCAGTATCCCAACTGCTGGATTTGTCCGTATTTTAGCCAGCACCGGTttgtatttaacccagcatttttggatttgttttatgAACTCTTTAAGTTTTGGTGAAGGGACAAAATATCTCagaacttatttaaaatgtcttatttagTGTTTGAAATTTCAAGTCATGTTTGCTTTTAAGggttaaatgatgaaagaatattcatttttgttcaaacgAACTCTTTAATTCTCACCTCTGACTAACTCTCCTACAGTTTGGTGCGTCATAACTTTGTGGAAACTGGGAAGGTAAGGAAAATCAAGAATTCACACattctagtgttttttttattcgaaAGGAAATGGACTTGTAATGTTTCTTTGTGGTTTTGACCAGATGTCTTTTTGACCACTTCCTATTCATCTTGTATTCTTGCTGTTGATGCCGTAAGCTATATTCTCTTCCATTTTCTTGACTGAAGGACAAGGATTCGTTACGAATCTAGGATCGCCCCTTAAGAAAACGGGGTTACCGTAACTCTTATGTGAATGAGACAATGACGTGGATTGTAAATTGGTGCATCTTCTTGTACTGTAGTGGATTTCTTAATGGACTACACTGCtatttattttcagtcattgcgctctttttcatgttttttaaagacCTTACTAATTTCCCCCAGTTTTGTACTCAGATGTACAAACAAATCTGATACAGGCAGAGAAAGAGCACATGGCTAGCCATACAGCTTCTTGAGCTAACGGGAAATAAGTGCCTTCCTCAGTGGCACAAAAGCATCGGTGGATGTGCCAATGGAGTGATTTGACCTGGAATCTTTAACTGTTGTAAATATACGTGAAACTGATTTGAATATTTACTGAGCCACCCATGTGCAAACAGACTCACCCACAGCCGGGGAACCATGTATTGAACATGTTGTTGTATTTAATTCATCTAGTAATGAATTTAACGGCAAGGTCGCTATATTCTGGAAGGCAATATTACAGGTGATGGAGGGCACAATACAAACTCAAATAAACTACTGATCTCCAATGGAGAATTTTTCAAAGTACTGTGACAGAAAATACTTTTGTCTGAAATGTATCCTGCTCTCAGTGAGAGTGTGACCGTATTGTGGCCAGGGCGAAAGTGTTCATATGTTTTATAAACTGTTAATGGGCGTTTGTCATTAATTATGTCAGAGTGTCATAGCAGATAAGAAGTTGTGACTGTGCAAATTTGGTCCTAAACATACCATGCTGAAATTATGAGGCTTTGATTTGCTTTTGACTGAACCGCCATGAGAGATGTAGCTAGATTTGTTTggcttttctgttttgttcttttctttgccttgtacttttgtttgttttggggcTATTCCAAAAGATGCATCTCATCCCTGTTGTAATTCTATTTGATGGAATGACACAATAAAGGTCTTGTTTGagattttaaaattgttcttATGTTCCTAGAGTCTGAGATGTGGAggtcttttgttgttgttgtatggTACAAGCACCAGCTTGTTCACTACACTTTTCAGCTGCAATCCATCATGTCTGAACTTGCCCTTACAAACAATTACTATGGGGCTATGGAATTGGATTTGCCAGCAAGTTACATTCATGTGTTTGCTGCTTcctctgctttttgttttatttatttgttgttttaactgATAATTAGTAAGTTATTGGAATGGAAACTGatctttaattaaagaaaaagttcaccccccccaaaaaaaatgctgacaagttactcatcatcaggttgtccaagatgtagatgattttgtttcttttgtgaaaattaGTACTGCATCACTTATTCACCTATGGATCCTCTAAAGTAAACGGGTACCATCGGTAATCCACtacagtccatcaattaacatcatgaagtgaaaagctgtgtgtttgtaaaaaacaaatgacCCATCCAATTATTGTGAGCTgctttgacggcacccattcactgcggatGATCCATTTATTGAGAAAGTggtgtaatgctacatttctccaaatctattccAATAAAGTAAGCTTTCAACACTTTtccagttttgggtgaactatttctttaacgcCCAAcatctaaaaatgatttatattggTTGTTTATTCAGTAATTTCATTCATCAAGCAGATTGTCCAGGctgcttttttaattgtaaactCTCGAGATTTACACCTACCACATTAAGACTTTAGATgactatttgtatttatttagttatgtattattattattattttaatcacagGAGCAGGCTGGTGAAATGCATTTCCATGAAGGCAACATTGCAGTACGTTATGGTACAAATCCAAGCAGTCATATGCACAACTGACGTACAATAAAAACTGTAGAATCAGtagttctaaataaataattaactcaTTCTGTTTCAATTTCCCTCAGTTTGacttgaatttaaaaacatcattgtCTGTCTCCTCTTTCATTCCTGTCTCTTTTGTTCATAAGACAAGGAAGTAGAGTATTTTAGCTCACTGATCTCTGCGCATGGAGACTTTATTCCAGCTAGGCAGAGGCAGTAAATGAATCAAACTGTCAGCTCATGGAGGTTTACCTCAACCCATGTTGTTCCTCTCTAAGAATAAATGCCTGTGGatgttt

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG:

id description
K05085 ERBB4, HER4; receptor tyrosine-protein kinase erbB-4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1514 lncRNA upstream 998 5156722 ~ 5156981 (+) True G1036
XR_006251106.1 lncRNA upstream 19125 5127490 ~ 5138854 (+) True LOC122346173
TU1485 lncRNA upstream 56657 5038720 ~ 5101322 (+) True G1016
TU1469 lncRNA upstream 161212 4979125 ~ 4996767 (+) False hecw2b
XR_006250916.1 lncRNA downstream 110172 5404612 ~ 5408298 (+) True LOC122344626
TU1543 lncRNA downstream 298774 5593214 ~ 5626276 (+) True G1064
TU1540 lncRNA downstream 319947 5614387 ~ 5622881 (+) True G1061
TU1539 lncRNA downstream 321280 5615720 ~ 5623944 (+) True G1060
TU1574 lncRNA downstream 379932 5674372 ~ 5674683 (+) True G1086
XM_043240779.1 mRNA upstream 1623 5149028 ~ 5156356 (+) True ube2f
XM_043240764.1 mRNA upstream 9089 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240418.1 mRNA upstream 132065 4979132 ~ 5025914 (+) True hecw2b
XM_043240506.1 mRNA upstream 180716 4967224 ~ 4977263 (+) False gtf3c3
XM_043247655.1 mRNA downstream 145625 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XM_043251527.1 mRNA downstream 299202 5593642 ~ 5600055 (+) True lancl1
XM_043246294.1 mRNA downstream 309267 5603707 ~ 5607415 (+) True mylz3
XM_043242358.1 mRNA downstream 313889 5608329 ~ 5610739 (+) False LOC122347193
XM_043242343.1 mRNA downstream 313897 5608337 ~ 5610739 (+) True LOC122347193
XR_006251062.1 other upstream 181133 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 213138 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 799683 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 800719 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1458886 3636707 ~ 3699093 (+) True G749
TU1696 other downstream 585020 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 762964 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 991418 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1239062 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1417195 6711635 ~ 6845548 (+) True G1447

Expression Profile