RNA id: XR_006251106.1


Basic Information

Item Value
RNA id XR_006251106.1
length 930
lncRNA type inter_gene
GC content 0.51
exon number 4
gene id LOC122346173
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5127490 ~ 5138854 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCAGCCTGGCAGGCTCACGCCTCCCAACACTTCCCCTGAGAGACGGACGCCGCTGAAAGGGTTTGCAATCCAATACGGCAGCTGCACACCAAAGCCAGCGGTTATCATTGAGAGCGCAGGGCCGTCTAAGCCTTCCCCCCTTTCCCCAACCGTTGGGTATACAGGATATTAGCTGGAACCTCTCATATCACCTTTGCCGCAATGGCTAATAATACAGCAGGCTGGAAATCAATGAACCTGCCCTAGATTTCAGCTCGCCGCTCTCCATAAAGGGATCTGGAGGGCAGCGGGGTTTTCGTTTTCTCCccgtttctctcttttctcttatTATAGGGGAAGAAAAATGGGTGACCGGGACTCGGAGATCATTTCTCCCGCTCTGAAAGTGCTAGCCGCTCTCTCCAGGGAGTTGCAGGTTATGTAACGGAGGAGCGGTCGTCATGGCAACCCCTCCACTCCGGTGCCCCGGTGGATGGTTTGATGAGCTGCCAGCAGTAGGGTCACAACTAATGGCATTCCAGCTGTCTGCCATCAGCTATCTGCACCCCACGTCTTCCATCAGCACTGATCCAGGACCAGACTGCAAATTCCAAACCCCTTAACAAGATCATACTCCTAGATGGAACAAAATTCTGCTCTCAGATCAACATGCTCTCCTGATTTGACCAAAATAAGAGGCTGTTAGAGATTCGACTGAAGGAAGCCCCCGCCTCCACCGGGGATTTACCCAGATGCTTATTAAAGAGTTTGAAGAAAGCAAAGGCAGGAAATACCCGTAGGAAATcaaaaagaagGAATTCAACCATGTCACTTAAAGAGGCATGTCAAGGACATCACGTCTGCATCTAATGCGGAGCATGGAGGTGcacGACAACATCAGTGATCAAAGGTTTTCATTAAGGCAGTGATGACAAAGGAGCACAGGCACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1485 lncRNA upstream 26168 5038720 ~ 5101322 (+) True G1016
TU1469 lncRNA upstream 130723 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA upstream 130723 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA upstream 130723 4979153 ~ 4996767 (+) False hecw2b
TU1368 lncRNA upstream 149576 4977422 ~ 4977914 (+) True G948
TU1514 lncRNA downstream 17868 5156722 ~ 5156981 (+) True G1036
XR_006250916.1 lncRNA downstream 265758 5404612 ~ 5408298 (+) True LOC122344626
TU1543 lncRNA downstream 454360 5593214 ~ 5626276 (+) True G1064
TU1540 lncRNA downstream 475533 5614387 ~ 5622881 (+) True G1061
TU1539 lncRNA downstream 476866 5615720 ~ 5623944 (+) True G1060
XM_043240418.1 mRNA upstream 101576 4979132 ~ 5025914 (+) True hecw2b
XM_043240488.1 mRNA upstream 150227 4967186 ~ 4977263 (+) False gtf3c3
XM_043240764.1 mRNA downstream 7054 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240779.1 mRNA downstream 10174 5149028 ~ 5156356 (+) True ube2f
XM_043240427.1 mRNA downstream 19125 5157979 ~ 5294440 (+) True erbb4a
XM_043247655.1 mRNA downstream 301211 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XM_043251527.1 mRNA downstream 454788 5593642 ~ 5600055 (+) True lancl1
XR_006251062.1 other upstream 150644 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 182649 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 769194 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 770230 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1428397 3636707 ~ 3699093 (+) True G749
TU1696 other downstream 740606 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 918550 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1147004 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1394648 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1572781 6711635 ~ 6845548 (+) True G1447

Expression Profile