RNA id: TU1485


Basic Information

Item Value
RNA id TU1485
length 4076
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id G1016
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 5038720 ~ 5101322 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCAGTAAGATTCTACCATTTATTACACATAATGacattcttaaataaaaatgcttcacTTAACAGTTCTTGCATAGATATATTACAATaccaatttaaaaaagaattatgaaacaaaccggtaacaaaaataaactcttttcctttttccttaaTAAAGAACATTGTCATACTAACAtcatataatacaaataatatatgcaaacactttttacagcaaataaaacaaaaataaaaaacggcATAAATATAGGAGCAGAGTGGAAAGCATGAAATGCCTGCGAAAAGCAGAGGGATCGGAACAGATTTAATTTACAGCAGGAAGTGTGGAAAAAAGCCTTTAACCAGAAAACTATGCTACGAGTGCAACGAACATTGGAAATCACTCTGTTTATCGGCTTCATACCGTCCATTTGAAAGCTTTTAGCACAGCGTTTTGAGCAATAGAAGGGTACAAAGGAAACAATGCTTCAGATGTCTAGTGAGCGAATGGAGACCAGCTGCTAACGTGAACGTATAGACTAATGCGTCAATCCAAAAACATAACTATAACATGTACAGACCTCTAAAGCGGACTAATCATAACGTCACGAATTATGAAATGCATTCGAACTCCTAATTCAGTGTTCCCTGCATGTTTAGTGGTGTCTCAGCTCATGCCAGATCTTTAAGATGGAACCGTTTCATTGCCGAATGTAAAAAAACGTACCTGCAAGTGTGCATCGGTAATTACAAATCATTGCATTGTCCCACAGCAAAAAGGTCAGTTAGTTGTCTGTGCGATTTAAAAGCCGTTTAAGTGGGTAACATACAAGGTTTATACACACTCGAGAGAAACTAAAGACGGCGCACATAAAACAAGCCCTAAAAAGCAGACAACGAGCTGCTCTGTGGGGTTTCTCAGGACCATTAAGACGAACTCATTAGCTAGTTTTTGCCAAGGTAACATGCCTAATTGGTCCGGCTGGAGGATGTTAAAGAAGGGTTTTAAGAAAAAGGTGCACTTAAAGTGAACAAATGGTCAAATGTCCACTGGGAAAACTACTAGTGAACATCATATATCTTGATTCATAGAATGCAATAACTTGACAAGCTCCGTGAGAATTTCAGCACAAGACTTGTGATGTGAACACTGTCCTCACAAAGCCTGACGAGAAATGCCTACGTCATATTTCACCTAAAACTGCcaattaacattattttgcaTCGTGACAATATTATCATGACAGTATTGTTTatgaacatatacatatattgttatACGATTACATATATAGTTACATTACATGTATAGTTgtacaattttacattatttattaaatatattacagttaaagctgcagtccataagttttgcctctttgtatGTGACTATCAATATACACCGTATGAACCAAATGTTAATTTTCACTGGACATGTCTGCCgcttttgttctgtttattcatatatactGGTTATTCATATACTTTGTTATcaacatgttaaatatttcgCTTGACTATTGTTTATTACCAATAAATCAAGCTAAGTTAAGGAGATCGCTAAGGAAAGTTTTCAACACTGGCTGGTTACTTGCCCAATAACTGATTTAGCATCATTTTGAACCAAAACAAAGTTAAGAACTGCAACTTTAAATGAGAATTGGGTAATAATGTCACACTGCAGAATAAACGCCTCATTTAATCTCAGTATTATCTCTTTCGTTTTTCGAGGTGAAATATGAAACGTGTTTGTGATGTTATTTATCGTATGGAGTTTATCCTTCTCGCCATAGACCCTAAAACAAATACTATTGTGTGCACCAATATCAAATCTAAGTCTTTGTCAAACTGAAATTATTATCTTGCATACATGATCAACAGGATTGATCTACTAATAGTTTTCGAGACTTGACATTGGATTGTTTTGCCCAAAAATGTGGGACAACATGAAGCTTCGCTTCCTAGTCTGCATAGCCCACGATCATGTTTTCTGAACTACAGATAAATTGTAACATTTCAGGTTGCAGTCTTGAATCCTCTATGAAAAGCAGATATCATGCACTAGATTTCAGCTGGAAAAGCGGCCCGTGCGATGGTCTCTTGAGGACATCGGATGCACGCGGCTCTGCTCTGGATTCCGGTGACCTTGTgtctttgttatttttcatgGAGCTAATGTGGCTAGGGAAGGAGGTAAGCTGACACCCGGCTACATGGTGAAATTGACTGTGTCGGGCGGTTGCGATAAGATCTCCCGGTCAGCATAAGTGTGGCGTCCGACCCCCAGTGTGGTCCTACTCCGTTCCGCCCCATTGAGAGGGCGACCAGCGCTGGCCGCAGCCGGGAGAGCCCAATTCCTTTCTCATTACCCATACTGCCATTCTGTCAGACGGGCCTCCCGTTGGTCCATGTTAGACAAGTGAGTGAGAAGGGCAAAAAACTGACAGACGGCTTGAGCAAGACATGAATATCCTTGTCCATCACCTATTTTTGGGTGATATGATCCAGATGGTGCTTTTTATGATCTGTAGATATGGTTAATAAAGGTCAtgatatgcaataaaaatgctaatgtgTATGCTgtctaaaatttaattttggttCCGTTTATGCATTGATCTCAGGGGTTTATAAGTCTTTGAATCGGCATCTTGATGTTTATATACAGTGCGgtggttaaaaaataaagcaaatctaTGTTGTTTGTGCTCATTTTATACATCTTCAGATCTCGGCCTCTCAGTTTAATCacacaaatgaacacaaaaccGCTTAATCAGGTTGTTGGAAAAGCAATAGTTCAcatgaaattgttatttattgacCTTCATGTTGGTCCAAAGCTGTATGACTTATGACAGGAAAATATTGGGAATCGGGATTGGGAATCAAACTCGAGTCACTGTGAGGCTATTGGTGTTCGACtatcattttcatatataacataaaagCAGCTTCAATGAAATCTGAAATCTTACGTATTATAGGTGCGCGAAGATACTTTTGTCCTAAAACCCAAGCTTTTTCCATGtcttatttgtcattttgaaaatatggaaGTGAGAATGAGATTCAAGAGCTACCGCAAAAAAGTAAGACTTGAATAACGAGTAAATTTTGGTCCGTTTCGCACAAGTCTTGAATTACAGTCGCACTATAGACTATTTTTATGGTCcttcaatgtcttttttttttgtttgacagcCTCCGTTCCTGTTTTCCATTCTTTAGCGTTCCACCaaggaaagaaagtcatactggtttggaatgacattaggTTGAGTAAACGATGACCGATTTCTCATTTGATGTGAATTATTCCTTCATCAACAAGCATTCGTGTAGATCTTCATGCATGAGCCAAAGTGGGATCTATGTTGAGAAGATCAGGCCTTTCAGTGGTCTGAATGATTGCATAAGTGCAGGGCCGTCCACAATCAAACAACCTTACATTCAGGAACACTTTCCATCCCACACTTGATTGTACGTTGTAATTTAAACCTCACTTTTACTATACAATTTACACACTGTACAGCTGTTTTTACCGGGAACACAAGATATGtaatgtgtaagaaaaaaaaaacaaagaaaaaaaaacatcacaaagtCACCTGCAGGACCAGcgaaacacaacacacaccttTCTTAGGATGCTTCCATCCGTgcaaactaaaataactgatGGGAAATGTCTGTCCGGACAGTTTTTCGGGACATACCGTGATGCATTTACAGAATCTAAACGTTGTGATTGCAAATCTCTGCCTTGAATGATGGAAGTCATTATTCTGTAGTGAAGTCCGCAGATAAACCATGGTGCTTTTCTCATTTCATGCTAGTCCTAGAAATCCCGAAGGAACCCAAGTTTATGGGATAACGTTTCATGGGTCATAAATAATGTTGAGGAATGCTCAAAACGTGTGCAACAACAacattgcttttcttttcttttcttttctttttttcaccaCTAAAAGTTTGCGTTTCTATAGAAATGAAGTCCACCTCTGTCTGTGCCAGTGTAGAATCCACTACTCTTCGCTTGTGCAtatggcagttttttttttttttttttttttttgttttttttgtttt

Function

GO:

id name namespace
GO:0007420 brain development biological_process
GO:0060322 head development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1469 lncRNA upstream 41953 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA upstream 41953 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA upstream 41953 4979153 ~ 4996767 (+) False hecw2b
TU1368 lncRNA upstream 60806 4977422 ~ 4977914 (+) True G948
TU1377 lncRNA upstream 93886 4938219 ~ 4944834 (+) False prkag3a
XR_006251106.1 lncRNA downstream 26168 5127490 ~ 5138854 (+) True LOC122346173
TU1514 lncRNA downstream 55400 5156722 ~ 5156981 (+) True G1036
XR_006250916.1 lncRNA downstream 303290 5404612 ~ 5408298 (+) True LOC122344626
TU1543 lncRNA downstream 491892 5593214 ~ 5626276 (+) True G1064
TU1540 lncRNA downstream 513065 5614387 ~ 5622881 (+) True G1061
XM_043240418.1 mRNA upstream 12806 4979132 ~ 5025914 (+) True hecw2b
XM_043240480.1 mRNA upstream 61457 4967186 ~ 4977263 (+) True gtf3c3
XM_043240764.1 mRNA downstream 44586 5145908 ~ 5148890 (+) True si:ch211-93g23.2
XM_043240779.1 mRNA downstream 47706 5149028 ~ 5156356 (+) True ube2f
XM_043240427.1 mRNA downstream 56657 5157979 ~ 5294440 (+) True erbb4a
XM_043247655.1 mRNA downstream 338743 5440065 ~ 5562873 (+) True si:ch73-383l1.1
XM_043251527.1 mRNA downstream 492320 5593642 ~ 5600055 (+) True lancl1
XR_006251062.1 other upstream 61874 4967186 ~ 4976846 (+) False gtf3c3
XR_006251076.1 other upstream 93879 4938183 ~ 4944841 (+) True prkag3a
TU1199 other upstream 680424 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 681460 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1339627 3636707 ~ 3699093 (+) True G749
TU1696 other downstream 778138 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 956082 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1184536 6285858 ~ 6287198 (+) True G1318
TU2062 other downstream 1432180 6533502 ~ 6536957 (+) True G1414
TU2119 other downstream 1610313 6711635 ~ 6845548 (+) True G1447

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00003323 True 1750 lncRNA 0.34 2 NC_007112.7 6398199 ~ 6400326 (-)