RNA id: XR_006251100.1


Basic Information

Item Value
RNA id XR_006251100.1
length 963
lncRNA type inter_gene
GC content 0.42
exon number 4
gene id LOC122346140
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 4896504 ~ 4918795 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TATCGTCCGGGATTCATACCAAACCGCACTTTGAACGGGATTGAACGGTCCTGGGCGACGGAGAAACGTCTCTCGATACTTTCTCCCCGAATTCGCGCCCGCTGAGCTCCAGAGTGAAACCGGAAGCGGTAAATATCGGATCACATCCCTGATCTAGGAGCCCCTAGCATGGCACGAACTCTAGCCTCTGTCTTTGAAGTGCCGGCTAAGATGACCCCAAACGTGCTGAGCGTTCAAAGCAATGCTAGACCGCTGTAGACGGAGACGATCAGGTGTGTGAGAGACCAGCTGCACCACGAAGAAGAGCAGAAGTCTGGATACTGATGGCTACTGTTTGGCCGGTTTTTGTCCGTGAACGGCTGTCGGGGGAGGATGAGCCTCTACTGCAGTCTACTCAGGTGTCTTCAAAAGATGCAGGTGACATCAGAAATCGTCATTTTACAGACCGCAACATTTTGTATGTCGActattaaatgcactttttttaagcaCAATTCACTGTtgtgaatttttgaaaatgagctttcgtgcattaaaagctcacaaactcTGCCGTGAAATGCGGAAAAGGTTcggaaaaatgtataattgactgaatcgtttgggagttgtTGAAAAAGTAaggtataaataaatgcatgttataagtgttttttgatCTTGCACGCTTGTCAACCTGCAATTTggtcccaaaaccaaaatactaTCTTTTCATAACCAACAATAGAGGCGCTTTAAGCAACtcaaaaacatgacatttcaacttaaaataattttagataCAAAGATCAGAAgaatagctttttattttgaaattgaaattatttttgtaaccgTATAAATGGTCAGTTTTGGTCAATCTggtgcatccttgctgaataaaagcattcatttctgaAATCTGCTGAATATGCTGAATCATCAGGGTAATGCAATTTACTTGAAAATATGGCAAGTCTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006251104.1 lncRNA upstream 268878 4624047 ~ 4627918 (+) True LOC122346166
TU1228 lncRNA upstream 277067 4619243 ~ 4619729 (+) True G853
TU1249 lncRNA upstream 279857 4616118 ~ 4616939 (+) True G872
TU1246 lncRNA upstream 281394 4614818 ~ 4615402 (+) True G870
TU1244 lncRNA upstream 282666 4613572 ~ 4614130 (+) True G869
TU1377 lncRNA downstream 19424 4938219 ~ 4944834 (+) False prkag3a
TU1368 lncRNA downstream 58627 4977422 ~ 4977914 (+) True G948
TU1469 lncRNA downstream 60330 4979125 ~ 4996767 (+) False hecw2b
TU1470 lncRNA downstream 60330 4979125 ~ 4996767 (+) False hecw2b
TU1468 lncRNA downstream 60358 4979153 ~ 4996767 (+) False hecw2b
XM_043240631.1 mRNA upstream 232286 4659870 ~ 4664510 (+) True LOC122346006
XM_043240644.1 mRNA upstream 238904 4652632 ~ 4657892 (+) True LOC122346016
XM_043240618.1 mRNA upstream 247429 4644934 ~ 4649367 (+) True LOC122346000
XM_043240557.1 mRNA upstream 299719 4590031 ~ 4597077 (+) True atic
XM_043240754.1 mRNA upstream 335086 4555607 ~ 4561710 (+) True stk16
XM_043240532.1 mRNA downstream 3732 4922527 ~ 4931978 (+) True abcb6a
XM_043240606.1 mRNA downstream 13660 4932455 ~ 4937679 (+) True cnppd1
XM_043240687.1 mRNA downstream 19386 4938181 ~ 4943736 (+) False prkag3a
XM_043240694.1 mRNA downstream 19386 4938181 ~ 4943736 (+) False prkag3a
XM_043240678.1 mRNA downstream 19388 4938183 ~ 4944841 (+) False prkag3a
TU1199 other upstream 538500 4358007 ~ 4358296 (+) True G826
TU1197 other upstream 539536 4356698 ~ 4357260 (+) True G824
TU1118 other upstream 1197703 3636707 ~ 3699093 (+) True G749
TU1095 other upstream 1555920 3334658 ~ 3340876 (+) True G727
XR_006252051.1 other upstream 2154584 2742079 ~ 2742212 (+) True LOC122353699
XR_006251076.1 other downstream 19388 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 48391 4967186 ~ 4976846 (+) False gtf3c3
TU1696 other downstream 960665 5879460 ~ 5881134 (+) True G1168
TU1714 other downstream 1138609 6057404 ~ 6087655 (+) True G1183
TU1931 other downstream 1367063 6285858 ~ 6287198 (+) True G1318

Expression Profile