RNA id: TU1095


Basic Information

Item Value
RNA id TU1095
length 2210
RNA type TUCP
GC content 0.46
exon number 2
gene id G727
representative True

Chromosome Information

Item Value
chromosome id NC_056699.1
NCBI id CM032068.1
chromosome length 31761587
location 3334658 ~ 3340876 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ATCAATATAGTGCTGTTTCATTTCCTTTCTCCAAGCTTTTCAAGCAAGAGGCTCTGCGGCACAGGAACAACAGTGATTAACGCTTCAGATCAACAGCCTAtccaacaaaacacaagattaTTTGCAGTAACTCCTCAGTTCTGCTGAGGGAGTGTTGGAGCGAACAATTCTCTTATCAGTGTCTGAAGGAGTGTGTGGATCTGCTAACTCGCACTCAAATCTCACGGTGTGTGAAAGACTTCATCAGACTCTTGTTTCAGGCTGAAATGGAATTGGCCTCCAAATTTCTCTCGCAGTGTCTCTGTCAGAGTTGATCATCCCTACATCGTCATCATCCTGTCTCTAGACATTTTCCGGATGACAGATTGCCTGTGAACCAACTGTAAACCATACGAACTCCACGATCAAACGGACTGCGCCAAAAGTGCTTCAAAAACTCTAAAGGAGAAACCAATGAGATTAGTCTTTCTCAGGAGAAAAATCTGGAGACTGCGAGATGCTGTCTAGGACAAACAGACGAGAAGAGTGATTTTTCCTTCCCACAGGCCGGATCCAGCGCTCACCTTTGAAATCGAGCCGTAATAGCTCTTTCAGATGTATCGCACCTAGCCTCTCTTGATAAACGCATAGATAGCGAGCGAGAGAGCGAGCGCGCGCGGTCGATAATGCAGTGAGCGCGTGGGCACCGTCCATTAAATAGCAGTTAATTACCCTGCACTGGAGATGAAAGGCTCATTTGTGAAACGGTCTCCTTCTCGCATTGATGAAATAGCTCTTCAAGTTCACACGCATGCTCTCTCGCGCAAACAAGTGCGCACGTTCCACACGTGCGGCATCCTAACGACGCCGCTTCAATCACAGGTGAAATTTTGCACGATCGTGACGCGTCCCTAAAGGAGAAAAACGGCGGATGTTTATATATAGAACGGTTTCCAGGGGTGAATTTCCAACGTGTGAATAATTCATGAGCCTTCATTACTGTTATCGACCGTTTCCTGTGTCCTCTCGCGCGGCCAAACCTAACAGATAATGTCTTCCTCTGATAGAGGGGTGATTGATATAAGTGCAGGCTTGCTTCCGAACAGGACAGTTTTCCCCTTCGACAAGGTTTCCTGCTCTTCCCACTTCTTTGttttctccacacacacacgcaccctCAAATTCACTCTGCTCCATTGCATCCCAAGCAGGCGTATTAGTAATCCATCAATGCTATTTCCAGTCCGTGGTCTCGCTGGCTGGCAGGGAGGAAAAAGGATTGGAGGAGAGACCTTGGACGCAGACAGTCCTTCGGCTTGCCATCGTGGCAAAATAATCACACAAAGGTGTCTGTGTGTCCCTAGCCCGGACTTCTGGAAAAAGGGGGATGTGAGCGGAAGAGATAAAGAAGGTAAACAAAACCGGTGACATACGCACTCGGTCCTGGGAGGCTCTGCCACATAATATAGCCGTGTCATGGGCTAGCGTGTGCCGTGGAAGTCTGGATAGGGGTTGAAGTACGTAGTCGGGTGGGTGgatgatgtttgtttgtttgttttttggaccGTGGCACGGCGCGTGGGTGCCAAACAGGCAGCGCATTGTAGCTCAACTGGACTTGGAAGTACTGGGactgaaagaaaagagagaaagagagacgggTTACGTTCAGAATAGCATACTAGCAAACGCTATTTCTGGAGTATGCGGTATATATAACGGTGTCCAAATTCCCTGATTTCATTTTGTACGTAAACCTTGCCAATCATTTCCAAAATGACGAATCGCCTAGAAATAGCATCAGCTGGAATTTTTAAGAAAATCCAAAAAATTTAAAGACACTTCTTAAAAATTCTGGAAAGTTTCTCCCCTTTGCGACCCTATAGATAACTAAGATGATGACTTAAGTATAATGAGGTCACAGTCACCGGTATTGTTACTGAtaactagaaaaaaaacttttttgcaaaaaaataatataataataaaataaataaaaatattaatacgaTATATATGTTAGATAAacacataattaaaacattgtgaCCTTTCTGTACGTATATTTCTCATGTCTTTGAGGCAAGTATTCACTGAAATTCATGTTGTTTCGCTTACGTCTCTGTGAAGACCCAGACGGCAGAGAACACGCAGAGcacattgttttgttattatggctatacacaaataaagtttcaaactatacatttttcttatctGTATGATCAAaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1087 lncRNA upstream 48456 3285949 ~ 3286202 (+) True G719
TU796 lncRNA upstream 603938 2726300 ~ 2730720 (+) True G546
TU785 lncRNA upstream 613735 2703522 ~ 2720923 (+) True G538
TU769 lncRNA upstream 707254 2626045 ~ 2627404 (+) True G527
TU722 lncRNA upstream 728581 2603191 ~ 2606077 (+) True G486
TU1141 lncRNA downstream 379388 3720264 ~ 3720539 (+) True G771
XR_006250463.1 lncRNA downstream 679221 4020097 ~ 4024338 (+) True LOC122341420
XR_006251095.1 lncRNA downstream 868533 4209409 ~ 4218600 (+) True LOC122346127
XR_006251103.1 lncRNA downstream 878366 4219242 ~ 4221288 (+) True LOC122346159
TU1185 lncRNA downstream 953177 4294053 ~ 4299198 (+) True G815
XM_043246568.1 mRNA upstream 213838 2941770 ~ 3120820 (+) True LOC122350229
XM_043246576.1 mRNA upstream 213838 2941770 ~ 3120820 (+) False LOC122350229
XM_043224891.1 mRNA upstream 552474 2758083 ~ 2782184 (+) True LOC122328837
XM_043235163.1 mRNA upstream 592247 2739677 ~ 2742411 (+) True rpl24
XM_043240364.1 mRNA upstream 634434 2691742 ~ 2700224 (+) True tmem39a
XM_043251222.1 mRNA downstream 463723 3804599 ~ 3817996 (+) True slitrk6
XM_043249780.1 mRNA downstream 666899 4007775 ~ 4011370 (+) True LOC122352357
XM_043236152.1 mRNA downstream 880407 4221283 ~ 4232503 (+) True LOC122342374
XM_043240733.1 mRNA downstream 1154318 4495194 ~ 4499239 (+) True spry2
XM_043240593.1 mRNA downstream 1207576 4548452 ~ 4554686 (+) True tuba8l2
XR_006252051.1 other upstream 592446 2742079 ~ 2742212 (+) True LOC122353699
TU717 other upstream 738356 2594931 ~ 2596302 (+) True G482
TU696 other upstream 807414 2524525 ~ 2527244 (+) True G474
TU718 other upstream 820799 2511721 ~ 2513859 (+) False pcid2
TU731 other upstream 848670 2483673 ~ 2485988 (+) False grtp1a
TU1118 other downstream 295831 3636707 ~ 3699093 (+) True G749
TU1197 other downstream 1015822 4356698 ~ 4357260 (+) True G824
TU1199 other downstream 1017131 4358007 ~ 4358296 (+) True G826
XR_006251076.1 other downstream 1597307 4938183 ~ 4944841 (+) True prkag3a
XR_006251062.1 other downstream 1626310 4967186 ~ 4976846 (+) False gtf3c3

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU464916 True 801 lncRNA 0.47 1 CI01000299 1197441 ~ 1198241 (-)